| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_81748 |
|---|
| Symbol | TOM70 |
|---|
| ID | 4836808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | - |
|---|
| Start bp | 1501616 |
|---|
| End bp | 1503703 |
|---|
| Gene Length | 2088 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640388123 |
|---|
| Product | mitochondrial outer membrane specialized import receptor |
|---|
| Protein accession | XP_001383061 |
|---|
| Protein GI | 150864303 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.5687 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACG CCTCGAGCTT TCTCGCCAGA AACAGAAACG CCATTGTTGT GGCCTCGTTG
GCGGCAGCAG CTGCTACAGG TGCCTACTTG TACTACAGGG AGACCCAGGC TACCTCTACC
GGCTCCACTG CCGATTCCGG TGCCGATTCT GGAGCCAGCA GCAAGAAGAA GAAGCTGAAA
AAGTCAAAAA AGTCCAAATC CTCATCTGAA GAAACTTCGG CTGCTAAAGC TGAAAAGAAG
ACTGTTTCGA CTGAACCAAA GGATGCCATT TACCCTGTAA CTCTGGAAGG ATTACCCGAT
ATTAATGAAG AGACCATTGC CAACTTGTCT GACAAGGAGA AGGAAGAATG GGCTTTGGCC
TTGAAGGAGG ACGGAAACAA CGAATTCAAA GCCAAAAAAT ACACCGAGGC CATTGCCTTC
TATACAGCTG CCTTGTTGTT GAAGAAGGAC CCTATTTTCT ACTCCAACAG ACTGGCCTGC
TACTCGGCCC TCAACGATCA CGTCAACGTC ATTAAAGACA CCACCGAGGC CATCAAATTG
AAGCCAGACT ACACCAAGTG TGTCTTGCGT CGTGCCACCT CTTACGAATG TATTGAAAAC
TACGCAGATG CCATGTTTGA CTTGACCGCT TTAACGATCT ACGGTGGATT CTCAAACAAG
TCTATCGAAC AAGTCTTGGA AAGAGTATTG AAGAAGCAGT CGATGAAGAT TGTGGATTCC
AAGCCTAAGG AATTGAGATT GCCATCTGCT GCCACCATCG GCTCGTTCTT TGGAGCTTTC
TTGAAAGAAA CTGAACCAGA AGGCATCTCT GAAGAGTCTA CAGGCGCTGA TGCCTTCCTC
TACCAGGCAC TCAAAAATAT AAACTCCAAT ACCCCACAAG CCTACGAGGA TGCTGATACT
TTGATCAACC AAGCTGTAGA AGCCTACAAT GTTGAAGAAT TGAGCAAGGA CTCGGAAGAA
GCTGCTAAGG CTTCGATTGC CTTGGAGTAC TTGGCTGCAT TCCAGTTCTT GAAGAACGAT
CCTGCCTCTG CTGCCTCTCA TTTGGAAAAA GCCATCGCCT TGAAACCAAG ACCTAGATCG
TATATTTTCA GAGCTTTGAT CAACGCCGAC AAGTCGTCTT ATACCGAATC CCTTAGTGAC
TTTGCTAAGG CTGAAGAGAT GGACCCTAAT TGTCCAGATA TCTTCTACCA CTTGGGTCAA
TTGTTTTACC TTACTGGAGA CTTATCCAAA GCCCAGGCTA ACTTCGAAAA GGCTAAAGAG
TTGAACCCAG ACAATGTGTT TGCCTATATT CAACTCGCTT GCATAACCTA CAAGAATGGA
TCCATTGAAG CAGCTAACGA AAAGTTCACT GAAGCAAAGT TGAAGTTTGC TACCTCTCCA
GAAGTGCCAA ACTACTATGG TGAAATTTTA GCTGATAAAG GTGACATCCA AGGTGCTTGT
AAGCAGTTCG ATATTGCTGC CAGATTACAA GAAAGCTTGC CAAACTTCTC TGTTGGAGCC
TTACCTTTGA TCAACAAAGC CTCCATCATT TCCAGAGAAA GCTTTGAGAG AATCGACGAA
GCAGGTGAAT TGTTGAACAA AGCCTGTGAA TTGGATCCAA AATCTGAATT AGCCAGAATC
ACCTTGGCGC AGATCAAATT GCAGAAGGAT GAAGTGGAAG ACGCCATCGT GTTATTTGAA
GAGTCGTCTG ACTTGGCCAG AAGCTACGAA GAAAAAGTCC AGGCCACCTC GTTTGCCGAA
GCCACCAAGG TGCAAAAGAG AATTAAACAG GACCCCATTT TGACTGCCAA GATCTCCGAG
CTCATGGCAC AAAACGGAGT TCTTCAATAA AAGGTATCGT AAGATTCATA TGATTCATGA
AGGTGAAGCT TGTCACTGGA GAAGTATAGC ATTTTTTTCA TCATTGCATT AGAAATGAAG
AATAAAACAA AACGCTTTTG TACTATATCG TCTTTATCTT TTGCCTCAAA ACTGAAAATC
CACTTCTTGT AAATGTTTGC AAATGTTGCT TCTGTTGTTT GCCCACTATT CGGTTCATTC
TCTCATTACC TAGTTTATGT CGATGTTAAT TGTATATATA TTACTTTC
|
|---|
| Protein sequence | MSDASSFLAR NRNAIVVASL AAAAATGAYL YYRETQATST GSTADSETSA AKAEKKTVST
EPKDAIYPVT SEGLPDINEE TIANLSDKEK EEWALALKED GNNEFKAKKY TEAIAFYTAA
LLLKKDPIFY SNRSACYSAL NDHVNVIKDT TEAIKLKPDY TKCVLRRATS YECIENYADA
MFDLTALTIY GGFSNKSIEQ VLERVLKKQS MKIVDSKPKE LRLPSAATIG SFFGAFLKET
EPEGISEEST GADAFLYQAL KNINSNTPQA YEDADTLINQ AVEAYNVEEL SKDSEEAAKA
SIALEYLAAF QFLKNDPASA ASHLEKAIAL KPRPRSYIFR ALINADKSSY TESLSDFAKA
EEMDPNCPDI FYHLGQLFYL TGDLSKAQAN FEKAKELNPD NVFAYIQLAC ITYKNGSIEA
ANEKFTEAKL KFATSPEVPN YYGEILADKG DIQGACKQFD IAARLQESLP NFSVGALPLI
NKASIISRES FERIDEAGEL LNKACELDPK SELARITLAQ IKLQKDEVED AIVLFEESSD
LARSYEEKVQ ATSFAEATKV QKRIKQDPIL TAKISELMAQ NGVLQ
|
|---|
| |