| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_81646 |
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| Symbol | RFA1 |
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| ID | 4836927 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 133334 |
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| End bp | 135336 |
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| Gene Length | 2003 bp |
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| Protein Length | 616 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640388242 |
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| Product | DNA replication factor A |
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| Protein accession | XP_001382257 |
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| Protein GI | 150863697 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1599] Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins |
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| TIGRFAM ID | [TIGR00617] replication factor-a protein 1 (rpa1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.272017 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CTTGAACAAC AAGCACTGCC CACTATGAGT TACAATCTTT CCGGTGGAGC CTTGAGAGAT
GTGTTCTCCA TCAAGAAGCA CGCGCTGGTG AACACTCCCA TTATTTTACA GGTTACTAAC
ATCAAGCCTG TGCTTTACAA GGACGAAGTG AAGAAGTACA GACTTCTTCT CAATGATGGC
CAATACGCAG CCCAGGGTCT TGTGGATGAA CCTTGTATCA CGTATTTGCA GAATAACAAC
TTTTCCCGTT ACTCCATTAT TGAAGTTAAG GAGTTCTCGA CGTTTCCTAC TCAGAAACAC
ATTTTCATAG TAAAGGACGC GGTCATCGTT TCGCCAACTA GTGAAAAGGG CAACTCTAAC
GATTATATCA GCGTTGATAC GTACTATGCC GAACATCCGG ACGATGATAA TTTACAAATC
GCCCAGAGGC AAGCTGCTGG TGCCACTAAT GGAGCTGGAG CGCGTTCTGA ATCCCCAATT
CCTGGTAGTG AACAGAACAG ACCTCAGCAA TTTCAACAAC CACAACAGTA CCAAAACCAG
CCATCCAATC GAAACGGATT CCAGGGTAAG ATTACGCCCA TCGAGACATT GTCTCCGTAC
CAAAACAACT GGACCATCAA GGCTAGAGTG TCGTACAAGG GAGATCTCAG AACGTGGACT
AATGCCAAAG GAGAAGGCAA GTTGATTTCC GTCAACTTTT TGGATGAATC AGACGAAATA
AAGGCTAGTG CCTTCCAAGA TGTTGCCATA TCTGCCCATA AGTTATTGGA GGAGGGTAAG
GTCTACTACA TTTCCAAGGC TAAGGTCCAG GCTTCCAACA AGAAGTTCAA CACCTTATCC
CACCCATATG AGTTGGTGAT GGACAGAGAC ACCAAAATTG AAGAGTGTTT TGATGTAGAC
AACGTACCCA AGATGCACTT CAACTTCATC AAATTGAACC AAATTCCTAA CCTTGATCCA
AATGCCATTA TCGATGTCCT TGGAGCCTTG AAGATTGTTA ATGAGCCTTA CAAAATAACA
GCCAAGTCAA CAGGTAAGGA ATTCGACAGA AGAAACGTCA CCATTGTGGA TGAAACCGGT
TTTGCTATAG ATGTGGGTTT GTGGAATAAT ACCGCCACTG AGTTCAGTAT TCCTGAAGGC
TCGATTATCG CTTTCAAGAG TTGTAGAGTT CAGGATTTTA ATGGCAGATC TTTAACGTTG
ACTCAGACTG GTTCCATGTT GCCTAATCCA AACACCCCGG AACTGTACCT GTTGAAGGGC
TGGTACGATA ACCAAGGTGT CAATGCCAAC TTCAACAACT TGAAGGTAGA GAGTAGTGGT
GGCGAAACAA AAATTGGTGA TCGTAAAACA ATTGCACAGG CTCAAGACGA GAGCCTCGGG
CTTCGTTCGG AGAAGGAACC AGACTATTTC ACCGTCAAAG CAAGTATCTC TTTCATTAAA
ACTGATCCCA ACTTCTGCTA TCCTGCTTGT ACAAACGAAG TTCAGTACAA CAACAGAAAG
CTGGCATGTA ACAAGAAGTT AGTAGAACAA CACGATAATT CCTGGAGATG TGAAAAATGT
GACAAGAACT ACGCACAACC AACCTATCGT TATATTCTTA CCTGTTCCAT TATGGATGAG
ACCAATCAAA TATGGGTTAC GCTCTTTGAG AGAGAGGCTC TTAAGATTTT GGGCAAGGAT
GCCAATGAAC TTATTGCCCT CCAGGATGAC TCTGCCGCTT TCAAAGATTA CATTCAGGAA
AAGTGTTTTC AAGAACATGT TTTCAGAATT AGGGCAAAGC AAGATACTTA TAATGATCAG
GTAAGAGTCA GATACCAGTG TGTTGCCCTT TATGATATCG ACTATAACGC CGAAGCCATT
CATTTGAGTG AGCAATTGGA TTCATTATTG GTTTGATTTT ATTGTTTTCT ACCCATGTAT
TTCTACCATT CGTTATGTAT TCTGCTGTTT CCTCTTAATT GGTGTCTATA TTGTTAAATA
AGAGTTAATG TTATGTACAT GTT
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| Protein sequence | MSYNLSGGAL RDVFSIKKHA SVNTPIILQV TNIKPVLYKD EVKKYRLLLN DGQYAAQGLV
DEPCITYLQN NNFSRYSIIE VKEFSTFPTQ KHIFIVKDAV IVSPTSEKGN SNDYISVDTY
YAEHPDDDNL QIAQRQAAAR SESPIPGSEQ NRPQQFQQPQ QYQNQPSNRN GFQGKITPIE
TLSPYQNNWT IKARVSYKGD LRTWTNAKGE GKLISVNFLD ESDEIKASAF QDVAISAHKL
LEEGKVYYIS KAKVQASNKK FNTLSHPYEL VMDRDTKIEE CFDVDNVPKM HFNFIKLNQI
PNLDPNAIID VLGALKIVNE PYKITAKSTG KEFDRRNVTI VDETGFAIDV GLWNNTATEF
SIPEGSIIAF KSCRVQDFNG RSLTLTQTGS MLPNPNTPES YSLKGWYDNQ GVNANFNNLK
VESSGGETKI GDRKTIAQAQ DESLGLRSEK EPDYFTVKAS ISFIKTDPNF CYPACTNEVQ
YNNRKSACNK KLVEQHDNSW RCEKCDKNYA QPTYRYILTC SIMDETNQIW VTLFEREALK
ILGKDANELI ALQDDSAAFK DYIQEKCFQE HVFRIRAKQD TYNDQVRVRY QCVALYDIDY
NAEAIHLSEQ LDSLLV
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