| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_81469 |
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| Symbol | RDH2 |
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| ID | 4837133 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 819796 |
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| End bp | 820800 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640388448 |
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| Product | short-chain alcohol dehydrogenase retinol dehydrogenase Protochlorophyllide reductase |
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| Protein accession | XP_001382931 |
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| Protein GI | 126132812 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.761909 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.570556 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTCACG AAAAGCCCAA AGTTCCTTGT ATGACCTGGG GCGCATTCAT GCAAATCACC
GATAACTTCT GGCCAGGTCC ACCTACTCTT ACAGAAAAAG ACTATCCCTC TTTGACTGGG
AAGGTTGTAA TTGTCACCGG TGGAAATACC GGTGTTGGTT ATCAAACTGC TAAATCTTTA
GCTGGGTCTA CCAATGCTAA GGTCTACATA TTTGCCAGAA GTGAGGAAAA GGCATTGGCT
GCAATCAGGA GAATGGAACT TGAGGTCGCC CAGGAGTACA ATAAAAACAA AATTGATGTT
CACTTCATCA AGCTTGACTT GGGTGATTTG ACCACAATCA AAGCCTCTGC CGACGAATTC
CTCTCCAAGG AAGATAGATT GGATATTATC ATCCATAATG CTGGTGTCAT GACCCCACCA
AAGGGTTCCA AGACAGCACA AGGTTTTGAA TTACAACTAG GCACGAATGC CATAGGACCA
CATTTGTTTC AGAAATTCTT GGACCCATTA TTCATTAAGA CGTCTAAGTC CAACAAGCCT
GGAGAATCCA GAGTTGTATG GGTTGCATCT TCCGGACACT TCTTTTCTCC CGAAGGAGGA
ATCTTCTATC CAGATCCCAA TTTCAGAAAC ACCAACTTCC CATCCATGCG GATTTACGGA
CAAAGCAAGG CTTGTAATGT CATGCAATCA GTTGAATGGC CCAAACACCA TCCAGAAGCA
ACTAACGTTA TCAGTCTCAA TTTATGCCCC GGCGCCTTGA AGACAGATTT ACAAAGACAC
ACAGGCACCG CGGGCCGCAT CATGTCCGGC TTGTTACATG ATGCTAGAAA AGGTGCTTAC
ACTGAACTCT TTGCAGCCTT ATCTCCCTCC ATCACAGTCA AGGACCAAGG CATTCATGTT
ATTTCCTTTG GAAAGATTGG CTTCAACAGA AAGGATCTTA AAGATCCAGC TAATACTTCT
AAGGCTTGGG ACTTCTTGGA CAAACAAGTT GAAAAGTATT TGTAA
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| Protein sequence | MSHEKPKVPC MTWGAFMQIT DNFWPGPPTL TEKDYPSLTG KVVIVTGGNT GVGYQTAKSL
AGSTNAKVYI FARSEEKALA AIRRMELEVA QEYNKNKIDV HFIKLDLGDL TTIKASADEF
LSKEDRLDII IHNAGVMTPP KGSKTAQGFE LQLGTNAIGP HLFQKFLDPL FIKTSKSNKP
GESRVVWVAS SGHFFSPEGG IFYPDPNFRN TNFPSMRIYG QSKACNVMQS VEWPKHHPEA
TNVISLNLCP GALKTDLQRH TGTAGRIMSG LLHDARKGAY TELFAALSPS ITVKDQGIHV
ISFGKIGFNR KDLKDPANTS KAWDFLDKQV EKYL
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