| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_76518 |
|---|
| Symbol | TDH3 |
|---|
| ID | 4837443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | + |
|---|
| Start bp | 2239365 |
|---|
| End bp | 2240511 |
|---|
| Gene Length | 1147 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640388758 |
|---|
| Product | glyceraldehyde-3-phosphate dehydrogenase |
|---|
| Protein accession | XP_001382655 |
|---|
| Protein GI | 126132260 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.418865 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TCAGAATCAA TTCACATTTT TTCTTCCCTA TAAACAATTC ATCATGGCTA TCAAGATTGG
TATTAACGGT TTCGGCCGTA TCGGACGTTT GGTGTTGAGA GTCGCTTTGA CCAGAAAGGA
CATCGAGGTT GTTGCTGTCA ACGATCCATT TATCGCTCCA GACTACGCCG CCTACATGTT
CAAGTACGAC TCCACCCACG GTAAGTACGA TGGTGAAGTC AAGTCCGAAG GTGACGCTCT
TGTCATTGAC GGCCACGCCA TCAAGGTCTT CCAAGAAAGA GACCCAGCCT CTATCCCATG
GGGTAAGTCT GGTGTTGACT ACGTCATCGA ATCCACTGGT GTCTTCACCA AGTTGGAAGG
TGCCCAAAAG CACATTGACG GTGGTGCCAA GAAGGTCATC ATCACTGCTC CATCTGCCGA
CGCTCCTATG TTCGTTGTTG GTGTCAATGC TGACAAGTAC ACCCCAGACT TGAACATTAT
CTCCAACGCC TCTTGTACCA CCAACTGTTT GGCTCCTTTG GCTAAGGTTA TCAACGACAC
CTTCGGAATT GAAGAAGGTT TGATGACCAC TGTCCACTCC ATCACCGCCA CCCAGAAGAC
TGTTGACGGT CCATCCCACA AGGACTGGAG AGGAGGTAGA ACCGCTTCCG GTAACATCAT
CCCATCTTCC ACTGGTGCTG CCAAGGCTGT CGGTAAGGTT ATCCCTGAAT TGAACGGTAA
GTTGACCGGT ATGTCCTTGA GAGTCCCAAC TGTCGATGTC TCCGTTGTTG ACTTGACCGT
CAGATTGAAG ACCCCAGCCA CCTACGAAGA AATCTCTGCT GCTATCAAGA AGGCTTCCGA
AGGTGCCTTG AAGGGTGTTT TGGGCTACAC TGAAGACGCT GTTGTCTCTA CCGACTTCTT
GGGCTCTACT TACTCTTCCA TCTTTGACCA AAAGGCTGGT ATCTTGTTGT CTCCAACCTT
CGTCAAGTTG ATCTCCTGGT ACGATAACGA ATTCGGTTAC TCCACCAGAG TCGTCGACTT
GTTGGAACAC GTTGCCAAGG TTTCTGCTTA ACTATCCACG AAGTTGTAGG TCCACTGTGT
GAACCTGGAG CTTCCGTGTG GTGATTAATT ACCTATATAT TCATACATAT GAATTCATGA
AAATGAG
|
|---|
| Protein sequence | MAIKIGINGF GRIGRLVLRV ALTRKDIEVV AVNDPFIAPD YAAYMFKYDS THGKYDGEVK
SEGDALVIDG HAIKVFQERD PASIPWGKSG VDYVIESTGV FTKLEGAQKH IDGGAKKVII
TAPSADAPMF VVGVNADKYT PDLNIISNAS CTTNCLAPLA KVINDTFGIE EGLMTTVHSI
TATQKTVDGP SHKDWRGGRT ASGNIIPSST GAAKAVGKVI PELNGKLTGM SLRVPTVDVS
VVDLTVRLKT PATYEEISAA IKKASEGALK GVLGYTEDAV VSTDFLGSTY SSIFDQKAGI
LLSPTFVKLI SWYDNEFGYS TRVVDLLEHV AKVSA
|
|---|
| |