| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_70663 |
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| Symbol | |
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| ID | 4836827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 1397964 |
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| End bp | 1399662 |
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| Gene Length | 1699 bp |
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| Protein Length | 517 aa |
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| Translation table | 12 |
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| GC content | 45% |
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| IMG OID | 640388142 |
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| Product | predicted protein |
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| Protein accession | XP_001383036 |
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| Protein GI | 126133022 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1499] NMD protein affecting ribosome stability and mRNA decay |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00928066 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CTGAGATATT GTATATTTCT GTATAAACAC ACTGTTTCTT ATAACGAGTA TCCGCCATGT
CGAATTACTC CCAAATGGAA CAGAGCCAGA TAGGCTCTCA GCCTATAGCT ACAGTCTTGT
GTTGTAACTG TGGTGTGCCC ATGGATGGAT CCCAGGGACT TGTAATGTGT TACGACTGTA
TCAAGTTGAC TGTGGATATC ACCGAAGGAA TTCCACGTGA AGCAAATGTG TCGTTCTGTA
GAAATTGCGA GCGTTTCTTA CAGCCTCCCC AGCAATGGAT CAGAGCCGAG TTGGAATCAC
GAGAGCTTTT GGCACTCTGT TTGAGAAAGT TGAAGGGCTT GAACAAAGTT AGATTAGTCG
ACGCTTCATT TATATGGACG GAACCACATT CCCGTCGTAT CCGAGTCAAG TTAACCGTAC
AAGGTGAAGC TATGGCCAAC ACTATTGTTC AGCAGACGTT TGAAGTAGAG TATGTTGTTA
TAGCCATGCA ATGTCCTGAC TGTGCCAAGT CGTACACCAC CAACACCTGG AAAGCCACTG
TTCAGATCAG ACAGAAGGTT CCTCACAAGA GAACGTTCTT GTATCTCGAA CAGTTGATCT
TGAAACACAA TGCCCATGTA GACACCGTAT CCATCAAAGA AGCCAAAGAT GGTTTGGATT
TCTTCTATTC CCAAAAGAAC CACGCCGCAA AAATGTTGGA CTTCTTGAGT GCCGTTGCTC
CTGTCAAGGC CAAGAAGTCG GAAGAGTTGA TTTCCGTCGA TACCCAGTCT GGAAACTCGC
AGTACAAGTT CTCGTACTCT GTGGAGATCG TACCTATATG TCGTGACGAC TTGGTAGTTT
TGCCCAAGAA GTTGGCCCAC TCGCTAGGCA ACATCTCTCG TTTGGTAATC TGTTCTAAGA
TTACCAATGC AGTGCAATTT TTGGATCCTC TCACTTTGCA AACAGCTGAC TTAGCTGCTT
CTGTCTACTG GAGAAACCCA TTTGCATCCT TGTTGGATGT TACGCAGTTG GTAGAGTTTG
TAGTGTTAGA TGTGGAGCCT ACAGGTGATG TAAGAGGTAA AAATGTGTTG GCAGACATCG
AGGTATGCCG TGCCAAAGAC ATGGGAGTCA ACGATCACAC TTACTACATC AGAACCCACC
TAGGTGCTAT CTTGCATCCA GGAGACTCAT GTTTGGGCTA CTTCTTGACC AACACCAATT
TCAATTCCGA CTTGTGGGAC ACATTAGATA CTGACAATAC TCCGGAAGTA GTTTTGATCA
AGAAGCACTA CGCAAGAAAG AACAAGAAGA ACAAGTACAG ACAATGGAAG TTGAAGAGAA
TGGCCAAGGA ACATAGCGAC ATTGTTGCTA ACGACGATTC TAGACAAGCC AGACAAGAAC
AGGAGAGAGC AGAACGTGAC TACGAGATCT TCTTGCAAGA ATTAGAAGAG GATGAAGAGT
TGAGACAAAC CATTAACTTG TACAAGGCTG GAGCTGCACC TCCTCCTCCA CCCTCTCATG
GTGACATTGA AGAATTGGAA GAAGAAGATG AAGAAGCTCC TCAAATTGGA ATTGACGAGT
TGTTGGACGA ATTGGACGAT ATGACCTTGG AAGACCATCC TATGGAATAG TTGCTGAAGC
TGTAGATGGC TAGCTCGTTT CCGCCGATAG CCGTCCTTAT CTATGTATAC TAGCCTGCAT
GTAATCATAC ACTATATCG
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| Protein sequence | MSNYSQMEQS QIGSQPIATV LCCNCGVPMD GSQGLVMCYD CIKLTVDITE GIPREANVSF
CRNCERFLQP PQQWIRAELE SRELLALCLR KLKGLNKVRL VDASFIWTEP HSRRIRVKLT
VQGEAMANTI VQQTFEVEYV VIAMQCPDCA KSYTTNTWKA TVQIRQKVPH KRTFLYLEQL
ILKHNAHVDT VSIKEAKDGL DFFYSQKNHA AKMLDFLSAV APVKAKKSEE LISVDTQSGN
SQYKFSYSVE IVPICRDDLV VLPKKLAHSL GNISRLVICS KITNAVQFLD PLTLQTADLA
ASVYWRNPFA SLLDVTQLVE FVVLDVEPTG DVRGKNVLAD IEVCRAKDMG VNDHTYYIRT
HLGAILHPGD SCLGYFLTNT NFNSDLWDTL DTDNTPEVVL IKKHYARKNK KNKYRQWKLK
RMAKEHSDIV ANDDSRQARQ EQERAERDYE IFLQELEEDE ELRQTINLYK AGAAPPPPPS
HGDIEELEEE DEEAPQIGID ELLDELDDMT LEDHPME
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