| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_67138 |
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| Symbol | CDC48 |
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| ID | 4837646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 2496505 |
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| End bp | 2499400 |
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| Gene Length | 2896 bp |
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| Protein Length | 829 aa |
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| Translation table | 12 |
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| GC content | 45% |
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| IMG OID | 640388961 |
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| Product | Cell division control protein 48 |
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| Protein accession | XP_001382708 |
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| Protein GI | 126132366 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0464] ATPases of the AAA+ class |
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| TIGRFAM ID | [TIGR01243] AAA family ATPase, CDC48 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0876334 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTTTACCCAG GACAACTCTA GAGTCTTTCG CAATTACATC TCTCAACAAG CGTACTCGTT
TGTCATAATC CCGTAATTGT CTACCTTGTT TAGTTTGCCT ACTTTCGCTC TCTCCAGATC
TGACAGTATC AGTCGAGCAA TCATTGCGAA TAGTGCCTCC AACTTTACAA CAGTAGGTCG
TTATTAGTAA TTGTCACTAA TTGAACTAGT CAACTAATCA AACTAATCAT CTACGTTTTT
CAACCTATCA ATTCCACTAA TTGGTACTCT TATTCTATAC ATTATCTATT TGTACAACCA
TGACTGGAGA AGAAGAGAAG AAACCCCACT TTGATGCCTC CGGTGCACAT GCCGTCGACG
ACAAGACCGC CACCGCCATC TTGAGAAGGA AGAAGAAGGA CAACGCCTTG GTTGTTGACG
ATGCCACTAA CGATGACAAC TCGGTCATCA CGATGTCGTC CAACACAATG GAATTGTTGC
AGTTGTTCCG TGGTGACACC GTGTTAGTCA AAGGAAAGAA GAGAAAGGAT ACCGTGTTGA
TCGTATTGGC TGACGATGAT ATGGATGATG GAGTTGCCCG TATCAACCGT TGTGTGCGTA
ACAACTTACG TGTCAGGTTG GGCGACATTG TCACCATCCA TCCTTGTCCC GACATCAAGT
ATGCCAACAG GATCTCTGTG TTGCCTATCG CCGACACTGT TGAGGGCATC ACTGGATCGT
TATTCGATCT TTACTTGAAG CCCTACTTCG TGGAAGCTTA TAGACCCGTA AGAAAGGGCG
ACTTGTTCAC CGTCAGAGGT GGTATGAGAC AGGTCGAGTT CAAGGTTGTA GAGGTTGACC
CAGAAGAGAT TGCCATTGTA GCCCAAGACA CCATCATTCA CTGTGAGGGT GATCCAATTA
ACCGTGAAGA CGAAGAAAAC AACTTGAACG ATGTAGGTTA CGACGACATT GGTGGCTGTA
AGAAGCAAAT GGCGCAGATC AGAGAATTGG TGGAATTACC TTTGAGACAC CCTCAATTGT
TCAAGTCCAT TGGTATCAAA CCTCCTAAGG GGATTTTGAT GTACGGCCCT CCTGGTACTG
GTAAAACCAT CATGGCTCGT GCTGTTGCTA ACGAGACTGG TGCCTTTTTC TTCTTGATCA
ATGGTCCAGA AATCATGTCC AAGATGGCCG GTGAATCGGA ATCGAACTTA AGAAAGGCGT
TTGAAGAAGC GGAAAAGAAC TCCCCCTCCA TCATCTTCAT CGACGAAATT GACTCGATTG
CTCCAAAGAG AGACAAAACC AATGGTGAAG TCGAAAGAAG AGTCGTTTCC CAATTGTTGA
CTCTTATGGA CGGTATGAAG GCCAGATCCA ACGTCGTTGT GATTGCCGCA ACCAACAGAC
CCAACTCCAT TGATCCAGCC TTAAGAAGAT TTGGTAGATT CGACAGAGAA GTTGACATCG
GTGTACCTGA TGCTGAAGGA CGTTTGGAAA TCTTAAGAAT CCACACCAAG AACATGAAGT
TGGCCGACGA TGTTGATTTG GAAGCAATCG CCTCGGAAAC TCACGGGTTT GTCGGAGCTG
ATGTTGCCTC GTTATGTTCC GAAGCTGCCA TGCAACAGAT CCGTGAAAAG ATGGACCTTA
TAGACTTGGA AGAAGAAACT ATTGATGCCG AAGTCTTGAA CTCTTTGGGT GTCACCATGG
ATAACTTCAG ATTCGCTCTC GGTAACTCCA ACCCATCTGC ATTGCGTGAA ACTGTGGTTG
AAAACGTCAA TGTCACCTGG GACGACATTG GTGGTTTAGA CGCCATCAAG AACGAATTGA
AAGAAACCGT GGAATATCCT GTCTTGCATC CTGACCAATA CCAGAAGTTT GGTTTGGCTC
CAACCAAGGG TGTCTTATTC TTTGGTCCTC CAGGTACTGG TAAGACCCTT TTGGCAAAGG
CTGTAGCAAC AGAAGTTTCT GCCAACTTCA TTTCGGTGAA GGGTCCAGAA TTGTTGAGTA
TGTGGTACGG TGAGTCTGAA TCCAATATCC GTGATATTTT CGACAAGGCC AGAGCTGCTG
CTCCAACCGT TGTTTTCTTG GATGAATTAG ATTCGATTGC CAAGGCTAGA GGTGCTTCTC
AAGGTGATGC TGGCGGTGCT TCCGACCGTG TCGTCAACCA GTTGTTGACT GAAATGGATG
GTATGAACGC CAAAAAGAAC GTCTTCGTTA TCGGTGCCAC CAACAGACCC GATCAAATTG
ACCCTGCCTT GTTGAGACCG GGTAGATTGG ATCAATTGAT CTACGTTCCA TTGCCAGATG
AACCAGCCAG ATTGTCGATC TTGCAAGCTC AGTTAAGAAA CACTCCATTG GAGCCCAACT
TGGATTTGGC TGAAATAGCC AAGATCACAA ATGGGTTCTC TGGTGCTGAT TTGTCATACA
TTGTACAAAG ATCAGCAAAG TTTGCTATTA AGGACTCTAT TGAAGCCCAA ATTAGAATCG
ACAGAGCCAA GGCCGAAAAG GAGAAGGTTA AGACTGAAGA AGATGTCGAC ATGACCAAGA
CCGCAGTAGA AGAAGAAGAG GAAGAGGATC CTGTTCCATT TATCACTAGA GCACATGTTG
AAGAAGCTAT GAAGACCGCC AAACGCTCTG TTTCCGAAGC TGAGTTACGT CGTTACGAAT
CGTATGCCCA ACAGTTGCAA GCATCAAGAG GTCAATTCAC CAACTTCAGA TTCACTGAAA
ACGATGGTGC AGCTGCTGGT AACGAAGGAT CTGGTAACTC TGGTGCTGCT TTTGGTAGCG
TTGAAGAAGA AGATGATTTG TACAGTTAAT TGTGCCTCTA AAAGTAATAC TAATATTCAG
TTCTGCGATG CGCAAGCAAG TTGTTATTTC TTCTAGTTAC ACTCTATTAT ATCTTTTATT
ACATAAGCAA TAGTTG
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| Protein sequence | MTGEEEKKPH FDASGAHAVD DKTATAILRR KKKDNALVVD DATNDDNSVI TMSSNTMELL
QLFRGDTVLV KGKKRKDTVL IVLADDDMDD GVARINRCVR NNLRVRLGDI VTIHPCPDIK
YANRISVLPI ADTVEGITGS LFDLYLKPYF VEAYRPVRKG DLFTVRGGMR QVEFKVVEVD
PEEIAIVAQD TIIHCEGDPI NREDEENNLN DVGYDDIGGC KKQMAQIREL VELPLRHPQL
FKSIGIKPPK GILMYGPPGT GKTIMARAVA NETGAFFFLI NGPEIMSKMA GESESNLRKA
FEEAEKNSPS IIFIDEIDSI APKRDKTNGE VERRVVSQLL TLMDGMKARS NVVVIAATNR
PNSIDPALRR FGRFDREVDI GVPDAEGRLE ILRIHTKNMK LADDVDLEAI ASETHGFVGA
DVASLCSEAA MQQIREKMDL IDLEEETIDA EVLNSLGVTM DNFRFALGNS NPSALRETVV
ENVNVTWDDI GGLDAIKNEL KETVEYPVLH PDQYQKFGLA PTKGVLFFGP PGTGKTLLAK
AVATEVSANF ISVKGPELLS MWYGESESNI RDIFDKARAA APTVVFLDEL DSIAKARGAS
QGDAGGASDR VVNQLLTEMD GMNAKKNVFV IGATNRPDQI DPALLRPGRL DQLIYVPLPD
EPARLSILQA QLRNTPLEPN LDLAEIAKIT NGFSGADLSY IVQRSAKFAI KDSIEAQIRI
DRAKAEKEKV KTEEDVDMTK TAVEEEEEED PVPFITRAHV EEAMKTAKRS VSEAELRRYE
SYAQQLQASR GQFTNFRFTE NDGAAAGNEG SGNSGAAFGS VEEEDDLYS
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