Gene PICST_56388 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_56388 
Symbol 
ID4837450 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp1486785 
End bp1487849 
Gene Length1065 bp 
Protein Length343 aa 
Translation table12 
GC content43% 
IMG OID640388765 
Productconserved hypothetical protein 
Protein accessionXP_001383057 
Protein GI150864299 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG5580] Activator of HSP90 ATPase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.865609 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.352684 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCGTCA ACAATCCTAA CAACTGGCAC TGGGTCGACA AAAACTGCAT CGACTGGACC 
AGAAGCTACT TCTCCGAAAA CTTGATTGGT TTCGGTGCCA AAGATGAAAA GAATAGCATC
TACATTGACA AGGTATCTTC TGTAGACGGT GATGTAGTCG TCAGTCAACG TAAAGGAAAG
GTGATGTCCT TGTTCGACGT CAGCTTGATC TTGGGATTCT CAGGTCACGT AGAGAACGAA
AACCTGGTTC TGGGTTCTAT CACAGTTCCA TCTGTCAGCT ATGATTCTAC TGAAGACGAA
TTGCAATTCG ATATCAACAT CTTCAAAGAA ACCAGCTCAA ACTCTTCAGC TTCCACATTC
ATAAAGGCTA AGATCTTACC TCAATTACGT AAGATCTTGA TTAAGTTCGG CACCGACTTA
ATCTTGAACA ACAGTTCTGA CATCCAGATC TCGGCTGATA AGGTGAACTC GACTTTCACT
AAGGCCAACC AAGAAGCTTC TACTAAGTCT ACCACTGCTA GCAAGACTCA AGAGAAGAGT
TCTGCCCCAG CCAAGGTTGC TAATGTGTCT GCAACTACTG CTACTGCTAC TAGTACCACT
GCTGCTGCTG GTACTACTAC TGTTCAGAAC TCTAAGTCTA GTGTTCCAAA ATACAATACC
TCTTCCTTAT ACTTGGAGCC TTCGTTCAAT ACTACAGCGG AACAGTTGTA CATCACTTTA
TTAAACAACG CCAGAATTGG AGCATGGTCT CGTTCACATC CCATCATGGA AAGTGAAGTA
GCAACAGAAG GTTCCACAAT CGGATTATTT GGTGGTTCTG TCTCTTGTAA AATCTTGAAG
TTGGTGCCGA ACGAACATAT TGTTCAATTA TGGAGATTGG AAGACTGGAA GAAGGACCAC
TATGCGGAGT TGGATATCCG TTTGATCCAA GGGGCTGGTG AAACGAGAAT GGCTGTTTCT
TTCACAGGTA TTCCTATTGG TGAAGAAGAC AGAGTCAGAG GTAACTTTGA AGAATACTAT
ATAAGAGCCA TTAAGATCAC TTTTGGGTTT GGTGCTGTTT TGTAA
 
Protein sequence
MVVNNPNNWH WVDKNCIDWT RSYFSENLIG FGAKDEKNSI YIDKVSSVDG DVVVSQRKGK 
VMSLFDVSLI LGFSGHVENE NSVSGSITVP SVSYDSTEDE LQFDINIFKE TSSNSSASTF
IKAKILPQLR KILIKFGTDL ILNNSSDIQI SADKVNSTFT KANQEASTNS APAKVANVSA
TTATATSTTA AAGTTTVQNS KSSVPKYNTS SLYLEPSFNT TAEQLYITLL NNARIGAWSR
SHPIMESEVA TEGSTIGLFG GSVSCKILKL VPNEHIVQLW RLEDWKKDHY AELDIRLIQG
AGETRMAVSF TGIPIGEEDR VRGNFEEYYI RAIKITFGFG AVL