| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_56005 |
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| Symbol | |
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| ID | 4837358 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 1274321 |
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| End bp | 1276540 |
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| Gene Length | 2220 bp |
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| Protein Length | 719 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640388673 |
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| Product | predicted protein |
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| Protein accession | XP_001382465 |
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| Protein GI | 150863848 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.410085 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCCTC GTCAACAGAG CATTGGAAGA TTCTTTGGAT CTGGTGCTAC ATTGAAGAGA
GCACGCGAGG GCGATACTGA AGGAATAAAA AAGCCCAAAA CAGCAATGTC AGTTGACCTG
TTGTTATCTC AGACTGTCAA TAAGCTGCCT AAAAACCAAA AATCAGAATC TCTTACCGAT
GAACAAAACA AAAGAGAAGC TTTCCAAGTA TCTCAGCAAG AGTCCGAAAA AGATCAGGAA
CAGAAGCCGG ATACGGATCC AAGCGAAAGT GAGCCTGAAA AGGACAAAAC AGAAGAAATA
AAAGAAGCAT CGGAGTTGAT AAAGTTGTCA GAGAAAGAAC ATGAAAAACA TGTGGGAGAG
AAGCTTTCAG CCAAAATCCC CTACTCTAAG TTGACAGATG TTTTGGACAA GATTGAAGCT
GAATCTTCAA GATTGAAAAT AACAGCCATC GTCTCTGAAT TTTTCCTAGA AATCTTGAAG
CAATCGACTG TGGATAAACT TGTAAAGATT GTGTATTTGT TCATCAACAG ATTGGGGCCA
GACTATGAGC CAGACTTAGA GCTTGGTCTT GGTGAAACTA TCTTGATCAA GGCTATCAGC
GAATGTTACG GAAGACCTAG CACCAAAATC AAGAAGGATT ATCAAGAAGT TGGTGATCTT
GGCTTAGTCG CTCAGAAATC AAGATCTGGA CAACCCACCA TGTTCAAACC AGCACCCTTA
GATGTAGACC AGGTGTTTGA AAACCTTACA AAGATTGCCA AATCCACTGG TAAGGATTCG
CAGGCTAAGA AGATCTCGTT AATCAACAAA ATGTTGACCG CATGTAATGC CAAATCTTCT
GAAGCTAAAT TCTTGATTAG ATCTTTGGAG GGTAAGTTGA GAATCGGTCT TGCCGAAAAG
ACAGTATTGA TTGGTCTTGC TCAAGCTTTT GTCAACTATG AAGCAAAAGA CTCCAAGAGA
ATAAACCCAG AAAAGTTGAC TCAATCTGAA GATGTAGTTA GAGAAGCATT TTCTCAAATC
CCAAACTACG AGATATTGAT AAGAAACGCA TACGAGTATG GCATTTTCAA CTTGTTAGAC
CATTGCCAAT TAACGCCTGG AATACCTCTC AAGCCGATGT TGGCCAAGCC TACAAAGTCT
ATTAGTGAAG TCTTGGATCG GTTCCAAGGA GAGGAGTTCA CATGTGAGTA TAAGTACGAT
GGCGAAAGAG CTCAGGTACA TCTTTTACAT GATGGCACTG TAAGAATCTA CTCTAGAAAT
TCTGAGGATA TGTCCGAAAG ATACCCTGAT TTGATTTCTA TCATGAAAGA TTTCATAAAG
ACACAAGAGG GTCAGGCTCC ATCCATGATA TTGGACTGTG AGGCTGTGGC CTGGGACAGA
GTTGCTAACA AGATTTTGCC CTTCCAAGTA TTATCTACAC GTAAACGTAA AGATGTTGAT
GAAAAAGATA TTACTGTACA TATTTGTTTG TTTGCATTCG ACATTCTTTA TTTTGATAAT
GAACCTTTAA TTACAAAGTC CTTGAAAGAA AGAAGACAGG TCATGGAAGA GAACTTGACG
CCAATGGACG GCAAGTTCCA ATTTGCAACT GCAAAAAACT CCTCTAACCT TGATGAATTA
CAGCAATTCC TTGATCAATC TGTTAAAGAC TCTTGTGAAG GCTTAATGGT GAAGATGCTT
AATGGTAAGG AATCTTACTA CGAGCCTTCC AAGAGATCTA GAAATTGGTT GAAACTTAAG
AAAGATTACT TGGCGGGAGT TGGCGATTCG TTAGATTTGG TCGTTATTGG AGCTTATATT
GGAAGAGGCA AACGTACTGG AAATTATGGT GGTTTCTTAT TGGCTTCTTA TAACCAGGAT
ACAGGCGAAT ATGAAACGAC TTGTAAGATT GGTACTGGGT TTTCTGACGA AGATTTGGCT
TCTCTTCATA CGAAATTGAA GCCTACTGAA ATTTCTGTCC CCAAGCCGTA TTATGTTTAT
GATACCACGA ATTCCAACGC AAAGCCTGAT GTCTGGTTCG AACCAACCAC GATCTTTGAG
GTCTTGACAG CAGACTTGTC GTTGAGTCCA ATCTACAAGG CAGCTCATCA GGAATACGGA
AAGGGTATTT CCTTGAGATT TCCTCGTTTC CTTAGAATCA GAGACGATAA AGGCATTGAG
GACGCTACAA GTTCAACACA AGTGTCTGAA TTCTACGAGA GGCAGGCCAG TGTTAATTAG
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| Protein sequence | MAPRQQSIGR FFGSAMSVDS LLSQTVNKSP KNQKSESLTD EQNKREAFQV SQQESEKDQE
QKPDTDPSES EPEKDKTEEI KEASELIKLS EKEHEKHVGE KLSAKIPYSK LTDVLDKIEA
ESSRLKITAI VSEFFLEILK QSTVDKLVKI VYLFINRLGP DYEPDLELGL GETILIKAIS
ECYGRPSTKI KKDYQEVGDL GLVAQKSRSG QPTMFKPAPL DVDQVFENLT KIAKSTGKDS
QAKKISLINK MLTACNAKSS EAKFLIRSLE GKLRIGLAEK TVLIGLAQAF VNYEAKDSKR
INPEKLTQSE DVVREAFSQI PNYEILIRNA YEYGIFNLLD HCQLTPGIPL KPMLAKPTKS
ISEVLDRFQG EEFTCEYKYD GERAQVHLLH DGTVRIYSRN SEDMSERYPD LISIMKDFIK
TQEGQAPSMI LDCEAVAWDR VANKILPFQV LSTRKRKDVD EKDITVHICL FAFDILYFDN
EPLITKSLKE RRQVMEENLT PMDGKFQFAT AKNSSNLDEL QQFLDQSVKD SCEGLMVKML
NGKESYYEPS KRSRNWLKLK KDYLAGVGDS LDLVVIGAYI GRGKRTGNYG GFLLASYNQD
TGEYETTCKI GTGFSDEDLA SLHTKLKPTE ISVPKPYYVY DTTNSNAKPD VWFEPTTIFE
VLTADLSLSP IYKAAHQEYG KGISLRFPRF LRIRDDKGIE DATSSTQVSE FYERQASVN
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