| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_55623 |
|---|
| Symbol | |
|---|
| ID | 4837258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | + |
|---|
| Start bp | 2319412 |
|---|
| End bp | 2321988 |
|---|
| Gene Length | 2577 bp |
|---|
| Protein Length | 847 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640388573 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001382672 |
|---|
| Protein GI | 126132294 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0002] Acetylglutamate semialdehyde dehydrogenase
[COG0548] Acetylglutamate kinase |
|---|
| TIGRFAM ID | [TIGR00761] acetylglutamate kinase
[TIGR01850] N-acetyl-gamma-glutamyl-phosphate reductase, common form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.563607 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAGAC AAGTTGCCAG AACCTCGTCC GTGGTCAAGA GATTGGCCCC TGCTGCCCTC
AGAGTAGCAC CTGTGGTTTT ACCTATACTC CACACCGTCA GATCGAAGTC CAGTTCCAGT
ACTTCTAACT CTGCTAATGC TGCAGCTCGC TCATACTCTA CCAGATCCAC TGTGGTGCAG
TTATTGAACA ACATTGGTTC CAAAAGGGAA GTCGAACAGT ACTTGAAGTA CTTCACTTCT
GTTTCACAAC AGCAGTTCGC TGTCATCAAG GTAGGAGGAG CTATCATCAC CCAACAATTG
CCAGAATTGG CATCGTGCTT GGCCTTCTTG TATCACGTTG GTCTTTACCC AATTGTGTTG
CACGGAACTG GTCCTCAGAT CAACGAGTTG TTGGAAAACG AAGGTGTTGA GCCAGAATAC
ATTGACGGAA TCAGAATCAC AAACCCTAAG ACTATGGAAG TAGTCAGAAA GTGTTTCTTG
GAACAAAACT TAAGATTGGT GACAGCTTTG GAAAAGATGG GTGTTCATGC CAGACCCATC
ACTGCCGGTG TTTTTGGTGC CGAATACTTG GATCAAGACA AGTACCAGTT GGTTGGAAAG
GTTAATTCTG TCAACAAGTC TCCTATCGAA GCTGCTATTG AAGCCGGATA CTTGCCCATT
CTTACTTCTT TAGCTGAAAC ACCATCTGGA CAGTTGTTGA ACGTCAATGC TGATGTTGCT
GCTGGAGAAT TGGCTAGAGA ATTCGAGCCT TTGAAAATCG TCTACTTGAA CGAAAAAGGT
GGTATCATAA ACGGTAACAC TGGAGAAAAG GTTTCTGCCA TCAACTTGGA CGAAGAGTAT
GAAGACTTGA TGAAGGAATC GTGGGTCAAG TACGGTACCA AATTGAAGAT CAAAGAAATT
CACGACTTGT TGCAACACTT GCCTAGATCA TCTTCTGTTG CTATTATCGA TGTTAACGAC
TTGCAAAAGG AACTTTTCAC CGATTCTGGT GCAGGTACTT TGATCAGAAG AGGTTACAAG
TTGATCAACC GTAACTCGTT GAAGGAGTTC GGCAATCCAG ACTTGTTGAG AAATGCCTTG
TTGAGAGATC CAGAAATCAA GACGGGCAAG TTATCAGTTG CTTCGTACTT GAAGTTCTTA
GAATCCGTCA AATTCAAGAG TTACGGCGAC GAGCCCTTGG AGGTGTTGGC TATCGTTTTG
GAAGAAGCCA ACAAGATTCC AAAGTTAGAC AAGTTCTTGT CCTCCAAGAC TGGATGGTTG
AACAACGTCA CTGACAACAT CTTTAACTCT ATTAAAAAGG ACTTTTCATC ATTATGCTGG
ATCGTAAATG AAAATGACTC TAACCTCGCC TGGTACTTCA CCAAGTCCGA CGGTTCTTTC
GCCAAGAACG GTGAAATCTT GTTCTGGTAC GGTTTGAAGA CCGAAGAAGT ATCTGAATTG
ATCAAAGAGT TCGACTCTTC CAATATTGGC TCTGCTTTGT CATCTTCTAA GGAATCTGGT
GTTTTCTCTT CTCCAACGCA AAAGAGAGGT TTCCATACCA CTAAAGTCAG AAACTACTCA
AACCCAAACC CTCCATTACG TAAAGGTACA AACACAGAAA AGGCTAAGGT TGCTCTTATC
GGTGCTAGAG GTTACACTGG ACAAAATTTG ATCTCTTTGA TTGACAGACA CCCTCATCTT
GAAATCTCGC ATGTTTCTTC TCGTGAATTG GCTGGTCAAA AGTTGCAAGG TTATAACAAG
GACAACATCG TCTACTCAAA CTTACAAGTT GAAGACATCA AGAAGTTAGA AGAAAATGGC
GAAATCGACG TCTGGGTCAT GGCCTTGCCA AACGGTGTCT GTAAACCATT TGTCGACGCT
ATTGAGTCAG TTGAAAACTC CAAGTCCAAG ATTGTCGATT TATCTGCTGA CTATAGATTT
GACACTACTG GTGAATGGAT CTACGGTTTG CCTGAATTGA ACGATCGTCA AACTATCTCC
AACGCAAAGA AAATCTCCAA CCCTGGTTGT TACGCTACTG CTGCTCAATT GGCCATTGCT
CCATTGAAGG AATACATCGA TGGTCTCCCT ACCACTTTTG GTGTCTCTGG TTACTCTGGT
GCTGGTACTA AGCCATCTCC TAAGAACGAC GTCAAATTCT TGGAAAACAA CTTGATTCCA
TACTCGTTGA CCGACCACAT CCATGAAAAG GAAATCAGCT CGCAATTGGG TCTCCAGGTT
GCTTTCTTGC CCCACGTTGC TCAATGGTTC CAGGGTATTT CACACACCGT TTCTATTCCT
ATCAAGAAGG GCTCATTGAC TTCCAGAGAA ATCAGAAACA TCTACCAGGA CAGATACCAG
GGAGAACAGT TGATCACTAT CAGCGGAGAA GCTCCATTGG TGAGAGACAT CAGCGGAAAG
CACGGTGTCG TTGTTGGTGG CTTCGCCGTC AACTCCCAGC AAGACAGAGT TGTCATTGTG
GCCACAATCG ATAACTTGTT GAAGGGTGCT GCTACACAAT GTTTGCAGAA CATCAACTTG
ATCTTGGGAT ACGGTGAATA CGAGGGTATT CCAGATGACG TAGTCATCAG AGGTTAG
|
|---|
| Protein sequence | MLRQVARTSS VVKRLAPAAL RVAPVSSSST SNSANAAARS YSTRSTVVQL LNNIGSKREV
EQYLKYFTSV SQQQFAVIKV GGAIITQQLP ELASCLAFLY HVGLYPIVLH GTGPQINELL
ENEGVEPEYI DGIRITNPKT MEVVRKCFLE QNLRLVTALE KMGVHARPIT AGVFGAEYLD
QDKYQLVGKV NSVNKSPIEA AIEAGYLPIL TSLAETPSGQ LLNVNADVAA GELAREFEPL
KIVYLNEKGG IINGNTGEKV SAINLDEEYE DLMKESWVKY GTKLKIKEIH DLLQHLPRSS
SVAIIDVNDL QKELFTDSGA GTLIRRGYKL INRNSLKEFG NPDLLRNALL RDPEIKTGKL
SVASYLKFLE SVKFKSYGDE PLEVLAIVLE EANKIPKLDK FLSSKTGWLN NVTDNIFNSI
KKDFSSLCWI VNENDSNLAW YFTKSDGSFA KNGEILFWYG LKTEEVSELI KEFDSSNIGS
ALSSSKESGV FSSPTQKRGF HTTKVRNYSN PNPPLRKGTN TEKAKVALIG ARGYTGQNLI
SLIDRHPHLE ISHVSSRELA GQKLQGYNKD NIVYSNLQVE DIKKLEENGE IDVWVMALPN
GVCKPFVDAI ESVENSKSKI VDLSADYRFD TTGEWIYGLP ELNDRQTISN AKKISNPGCY
ATAAQLAIAP LKEYIDGLPT TFGVSGYSGA GTKPSPKNDV KFLENNLIPY SLTDHIHEKE
ISSQLGLQVA FLPHVAQWFQ GISHTVSIPI KKGSLTSREI RNIYQDRYQG EQLITISGEA
PLVRDISGKH GVVVGGFAVN SQQDRVVIVA TIDNLLKGAA TQCLQNINLI LGYGEYEGIP
DDVVIRG
|
|---|
| |