| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_55255 |
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| Symbol | PAN1 |
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| ID | 4837591 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 422526 |
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| End bp | 426842 |
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| Gene Length | 4317 bp |
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| Protein Length | 1373 aa |
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| Translation table | 12 |
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| GC content | 47% |
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| IMG OID | 640388906 |
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| Product | protein involved in actin organization and endocytosis |
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| Protein accession | XP_001382843 |
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| Protein GI | 150864136 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5373] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.62911 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACAATC CGTACCAGCA GCAGCAGGCG GGATTTGCTC CCCAGCAGAC GGGGTTTGCT
TATGCAAACC AACCGTCACA GCAGCCGCAG CAGTTCCAGC CCCAGCAAAC AGGGTACTAT
CCTCAACAAC TTCAGCAACA GCAGCAACCA CAACAACAAT TGCCCCAACA ATCTTTGCAG
CAGTCTCAGT CTCAACTTGC TAACCAGGCT ACGGGATTCT ACCAACCGCA ATTGCAGCAA
CAGACACTTT TCGCTTCGTC GCAATTCCAG CCCCAGACTT CGTTTGGCAC TGTAGCTTCT
ATCCAGCCAC AACAAACGGG CTACATTCAG ACGCAACCTA CCGGTTTTGC ATCCCAAGGC
ATTGCGGCGC CCACGGTAGT GGAAAACAGC AGTTTGAAGA TCCCCAGCAT TAGGTTGTCG
TTTATCACTG CTGAAGACCA GAAGAAGTTT GAACACTTGT TCCGTACGGC CGTTCCCAAG
GGAGAACAGG CCATCAATGG GGACTCGGCC TCGACCATTC TTTTGAGATC AGGACTTACT
CCTGTGACTT TAGCCGAGAT CTGGTCGCTT TCTGATACCA ACAAGCTGGG TTCATTGCTT
TTTCCTGAAT TTGCCTTGAG TCTTCACCTC TGTAGTATGG CCAAACGGGG AGAACCTCTT
CCGGGCTACT TGCCTGAAAA ATGGGCCAAT GAAGTGAAGT CGTTTGTGGA TGCCATCTCC
TTCTCGGTGC CAGAGGATCC TGATAAGATC TTGGCCAATA CGCCATTTGC CAGTTTCTCG
GGAACAAACA CGCAGGACGA TTGGTTGAGC AACTTGAACA ATCAGACCAA TTCTGCGGCA
GCCACTTCCA ATTTTGGTGC TCCTGGATTC ACTTCGTTTC AGCCACAGGC CACGGGATAC
GGAGGGGGAC TTCCACTTGC TTCGCAAAGA ACAGGACCCG GCTTGGCTTC TATTGGAACT
ACGTCTTTCT CGGCTCCTAC AGCTCCCACA GCTCCCACAG CTGCTCCATT GGCTTCTCAA
AGAACAGGAG GAGGTACATT AATCCCATTA CAACCTCAGC AGACTGCTGG TTTGATTCCA
GCACAAAAAA CTGGTCCTTT AAATGGTTTT CCACAGCAAT TGCAACAGCA ATCTACCGGT
TACCAGCCCC AATTACAACA ATTGCAGCAA CAGTCTACTG GTTACCAGCC CCAATTGCAA
CAATTGCAGC AACAGTCTAC TGGTTATCAG TCTCAGTTAT TGGCTCAAAG GACTGGACCT
TTGCAATCGC AATCGACTGG CTTCCAGCCT GCTCCACTTC AATCGCAGCC TACAGGAAGG
CCTGGTGAAT GGGGCTTTGT CCATACTCCC ACAGGTGGTA TTCCTGGCTT GAACGCTATG
CAGCAGCACT TTTTACCAAA CGCCGATCTA CCTACAAACA ACTTGCAAAA CCAAATGGGC
GGCGATTTGA AGTCGAATGT GACCTGGGCT ATTACCAAGC AAGAGAAGCT GATTTACGAT
GGCATCTTTC AAGCTTGGGA TACCACCAGA AGAGGGTACA TTGACGGAGA TGTCGCTTTG
AATGTGTTCA GCAAGTCTGG CTTAAGCAGA CCCGACTTGG AGTCGATCTG GACGTTGGCC
GATACGAGCG ATAGAGGCAA ATTGAACAAG GACGAGTTTT CCGTAGCTAT GCATTTGGTT
TATAGAAGAT TGAACGGGTT GGATATTCCT TTGAGATTAC CTCCAGAATT GATTCCTCCT
TCGAACAAGT ACTTGCAAGA CTCGATGGAT ACAATGAAAA ACTCATTGAG AGGTGGTGTT
AACAACAAGA GCTATTCTGG TGGCAAACAA ACAAAGTCAG ATGGAACCAG ATTTAAGAAT
GATGATGATG ACTTTGGCTA TGTGTCAAAT GCCCGCCACA GAAGGAGAAG CACTGCTACT
GATAATGGAC CAAAGAGTAT CAAAAGCTCG TCCGACTCCG ATTTGTCTGT AGAAGACTTG
AAGAAATTGA TTCGTGAAAA AAGAATCTTG ATCGATGCAC TTGATGCCGA AGACCAAGAT
GCTGTCTTGA ACAAGAAGAA GGAGTCTCAA CACAACATTG ACATTATTGA GAAGTTAAAG
AGTCAGATTA AGGATGTTCA AGCCAGTCTT AACAGCAAAG GATTGGATGC ACCTATTGAG
GAAAAGAAGC AGTTGCTTGG TGTTTTGAAC AGTTTGACTA GAGATAAAGT TCCAAACTTG
ATTTCAAACA TCTACAAAGT ACACAACGAT ATTGCCAAGG CTAAGGTAGA ACTATTGAAG
GCCAAGTTAT TGAAGCAGAA TCCTAGCTGG AATCCTGATA GTAACGAATC AGAGATCCAA
GGTACAGGGC CTAATGGCGA AGTCACTGAG CTTGATAGAA GAAAGTTCCA ATCAAAGCAG
TTGTTGAAGC AGAGAATGGC TGCTTTAACA GGAAGAACTT CCAATTCTGG TTCCAACGCC
GATTTGGACT TACAATTGAA ACAGGAATCT GAAAAGGCAA AGTCTGAAAG CATAAACCAG
TCTAATATCG TTAAGGATAT TGAATCCAGT ATCAAGGAGT TAGAAGATGG TTGTGCTACT
CATTTGCAAA CAAGTGCTAC GGAAGAATCT GGCTCTGAAA AGTGGGAAAG AGGACAAGGA
ATATCTGCAG AAGTTGCCGC TTTTGTTAGA GAGTTGAATT CTTTTGCTGA AAGTCAACGT
AGAAACATCG CTGCTCAGAA TTCATCTTCT CTTGAATCAT CCACTGTGTC TTCAACGGCG
GAAGTCTCTC AACCTGCAAG TTCTGTTTCT TCTCAGCCAG TTTCTGCTTC TTCATCTTAT
AGAACTCCTG AAGAGAGAGC TGCCTACATC AAGGCCCAAG CTGAGAAAAA GATGAATGAA
AGATTAGCCA AGTTAGGCAT TTCTCGTAGC AGAAATGCTA CGATAGCTGA GCCAAATCCA
CCTACTAAAG TGGATGCTCA ACCAGCTACC CCACCAGTTG CTCCAGCCGT TGTTGAATCT
GCGGCTGTTT CTCCTCCTGT AAAGAAACAA CCTCCTCCAG TTCTGCCACG TTCTGTCAGA
GTAGAACAGC AGAAGCCTGC GCCACCTGTC GATTCATCGT CTGATGATGA CGACGAAGAA
TATGCTGCTA TTTTAAAACA AAAGCAGCAG TTGGAAGCTA AGGAAAAAGA ACGCAAATTG
GCCAAACAGA AACAAAAACA GGCTCGTCTT GACAAGATTA AGAAGGAAAT GGAAGAAATC
AAGCGGAGGC AAGCTGAAGC TGAAGCTGAA GAAGATTCTG ACGAGGAGCC TTCTTCCGTT
CCCACATACA CTGTTTCCAA CAGTGCTCCG AAAGCTGTCG CAAAGACAGC AGAGGATCCT
GTAGTCGAAC CTGTAATTGC AAAATCTGTT GAACAAGAAG CTGTTCCAGA CCAGGTGGCT
GCTCCTAAGG CTCACGAGAG TAACCCTTTC TCAAAGGTGC AAGCTACACC AACAGGTAAC
AGCACTAACC CATTCTTCAA GCCCACTACC AAGGAGTCTA CTATTGACCC AAAGAAGGCT
GCTGCACAAA GAGCATCGCA GAGAGGACTT TCCAAGAACG ATGGCTGGAG TGATTCTGAC
GATAACGAAA GTGAAGATGA TCAGCCAAAT AGAGCAGGTG CCGCTCAGTT GGCCAGTTTG
TTATTCGGAG GAATGGCCCC AAAATCGAAG GAGTCAACTC CTCAGCAAAC TCCTCAACAG
GAAAAGACTG AAAGTGAAGC CTTGAGCAAA TCAGTAAGCA CTTTGAAGGA TCCTTCTGGT
TCTGACGATG AGTTTTCCAC CCCTCCACCA GATGCTCCTT CTCAACAGAC AGTTGCTCCT
CCTATTCCAA CTGAGGTTCC TCCAATCCCA ACTGAGGTTC CTCCAATCCC AACTGAAGCT
CCTCCAATCC CAACTGAAGC TCCTCCTATT CCAACTGGAG CTCCTCCTAT TCCAACCGAG
GTTCCTCCAA TTCCAACAGG AGCTCCTCCA ATTCCAACAG GAGCTCCTCC TATTCCAACC
GAAGCGCCTC CTATTCCTGT AGGGGGTCCA TCTTCTTTTG CTCCTCCACC ACCACCACCA
CCTCCTCCTC CACCTGGCCC TCCACCTATC CCTAATGCTC CATTTGGTGC ACCACCACCT
CCACCACCAC CACCTGGCCC TCCACCACCA GTATCAAACG GGGTGACAGC TCCACCAGTC
ACTGCTGACA TTGGTGCCTT GTTGGGACAA ATTCAAGGTG GTAAATCATT GAAAAAGGTT
GACGCAAGTC AACAGAAGAT TTCCAGTAAT GATTTAGCCG GAACTGTTTT GTCATAA
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| Protein sequence | MYNPYQQQQA GFAPQQTGFA YANQPSQQPQ QSQSQLANQA TGFYQPQLQQ QTLFASSQFQ
PQTSFGTVAS IQPQQTGYIQ TQPTGFASQG IAAPTVVENS SLKIPSIRLS FITAEDQKKF
EHLFRTAVPK GEQAINGDSA STILLRSGLT PVTLAEIWSL SDTNKSGSLL FPEFALSLHL
CSMAKRGEPL PGYLPEKWAN EVKSFVDAIS FSVPEDPDKI LANTPFASFS GTNTQDDWLS
NLNNQTNSAA ATSNFGAPGF TSFQPQATGY GGGLPLASQR TGPGLASIGT TSFSAPTAPT
APTAAPLASQ RTGGGTLIPL QPQQTAGLIP AQKTGPLNGF PQQLQQQSTG YQPQLQQLQQ
QSTGYQPQLQ QLQQQSTGYQ SQLLAQRTGP LQSQSTGFQP APLQSQPTGR PGEWGFVHTP
TGGIPGLNAM QQHFLPNADL PTNNLQNQMG GDLKSNVTWA ITKQEKSIYD GIFQAWDTTR
RGYIDGDVAL NVFSKSGLSR PDLESIWTLA DTSDRGKLNK DEFSVAMHLV YRRLNGLDIP
LRLPPELIPP SNKYLQDSMD TMKNSLRGGV NNKSYSGGKQ TKSDGTRFKN DDDDFGYVSN
ARHRRRSTAT DNGPKSIKSS SDSDLSVEDL KKLIREKRIL IDALDAEDQD AVLNKKKESQ
HNIDIIEKLK SQIKDVQASL NSKGLDAPIE EKKQLLGVLN SLTRDKVPNL ISNIYKVHND
IAKAKVELLK AKLLKQNPSW NPDSNESEIQ GTGPNGEVTE LDRRKFQSKQ LLKQRMAALT
GRTSNSGSNA DLDLQLKQES EKAKSESINQ SNIVKDIESS IKELEDGCAT HLQTSATEES
GSEKWERGQG ISAEVAAFVR ELNSFAESQR RNIAAQNSSS LESSTVSSTA EVSQPASSVS
SQPVSASSSY RTPEERAAYI KAQAEKKMNE RLAKLGISRS RNATIAEPNP PTKVDAQPAT
PPVAPAVVES AAVSPPVKKQ PPPVSPRSVR VEQQKPAPPV DSSSDDDDEE YAAILKQKQQ
LEAKEKERKL AKQKQKQARL DKIKKEMEEI KRRQAEAEAE EDSDEEPSSV PTYTVSNSAP
KAVAKTAEDP VVEPVIAKSV EQEAVPDQVA APKAHESNPF SKVQATPTGN STNPFFKPTT
KESTIDPKKA AAQRASQRGL SKNDGWSDSD DNESEDDQPN RAGAAQLASL LFGGMAPKSK
ESTPQQTPQQ EKTESEALSK SVSTLKDPSG SDDEFSTPPP DAPSQQTVAP PIPTEVPPIP
TGAPPIPTGA PPIPTEAPPI PVGGPSSFAP PPPPPPPPPP GPPPIPNAPF GAPPPPPPPP
GPPPPVSNGV TAPPVTADIG ALLGQIQGGK SLKKVDASQQ KISSNDLAGT VLS
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