| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_55251 |
|---|
| Symbol | |
|---|
| ID | 4837434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | + |
|---|
| Start bp | 2142773 |
|---|
| End bp | 2143669 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640388749 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001382636 |
|---|
| Protein GI | 150863975 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3663] G:T/U mismatch-specific DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00584] mismatch-specific thymine-DNA glycosylate (mug) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0254148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.277007 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGACA AGTTGAAGCT GCTTCAAGCT TTCAGATTCA AAGATAAGGA TGCCGAGAAA
GTAGTCGCGA ATTCAGAGAA AATACAGGTT GACAAATTGG TTACCAGACC AGTTCCTCAT
AAAGTCACTA AACCTACTAC GAAGAAAAGA GTCAAACCAA CTCTGAATAC ATACCCTGAA
CAGTACAAAG ATGTCCGTCC CTCTCTAGTA GAGAATTTGA CTCTTCTATT TATAGGATTT
AATCCCGGAA TGGAATCCTC ACTTCAACAA CATCATTATG CCCATTTCTC GAACTTGTTC
TGGAAACTCT TCAACCAGTC GGGACTACTA TTGCAATGCT TGGGAGTACT AGACCCACAG
TACTTACTGC ATAACTACGA TAATGATGAA TTACTACAGG TCCTCGTTAA AGATGGGACG
ACGTACGCCA AACCAGAACA CGACTACGAG CTTATAAAGT ACAAGATCGG GTTTACAGAT
TTGATATTGA GATGTACACG AACGGCACAG GAACTTCCAA TGGCCGAGAA GCTTGCCAAC
GTCCCCAGAT TGATAGACGA GTTCAATATG TCTAGCAGCA AACACATTGT GTTTATTGGC
AAAGGAATAT GGGAGGTTAT AGTGAAATAT GTGGAAGTAG AACTAGGAAT CAAGAAGGTA
AAGCTTTCGA AAGAGACTTT TATGTGGGGA CTCCAAGACT CTCAGAGTGT ATCAGCTCTG
AGAAGTGATA AAGACTCCAG GTTATATGCT CTAGTGCTAA AGAAGTTCCA GCTGAAGATA
TCCGCTGATT CTAAGGTCTT TGTTTTTCCA AACACGTCTG GGTTGGTAGG TTCGTTGAAG
TACGAGGAGA AATTGAAGTT GTGGCAGGAT TTGGCAGATG TCATCTCAAA AACTTGA
|
|---|
| Protein sequence | MSDKLKSLQA FRFKDKDAEK VVANSEKIQK RVKPTSNTYP EQYKDVRPSL VENLTLLFIG
FNPGMESSLQ QHHYAHFSNL FWKLFNQSGL LLQCLGVLDP QYLSHNYDND ELLQVLVKDG
TTYAKPEHDY ELIKYKIGFT DLILRCTRTA QELPMAEKLA NVPRLIDEFN MSSSKHIVFI
GKGIWEVIVK YVEVELGIKK VKLSKETFMW GLQDSQNSRL YALVLKKFQS KISADSKVFV
FPNTSGLVGS LKYEEKLKLW QDLADVISKT
|
|---|
| |