| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_55211 |
|---|
| Symbol | |
|---|
| ID | 4836966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | - |
|---|
| Start bp | 1734205 |
|---|
| End bp | 1735200 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640388281 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001383099 |
|---|
| Protein GI | 126133148 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3435] Gentisate 1,2-dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.110005 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCCAG CTGCTACACC ACAAACTCAG GAAACTCAGG ACAATGATGC CTTTTTAAAG
AGCATGCCCT TAGAGAATGT CGCACCCTTA TGGCATATCT TGAAGGACTT ATCTCCTCCA
AAGCCAAAGC CAACATCTGT GCCTCACCTC TGGAACTACA AAAAATTGAA ACCAATCTTA
GATGAATCTG GGCGTTTAGT ACCAACTGAA CTTGCCGAAA GAAGAGTGCT TATGTTGGTT
AACCCAAAGT TGACAGGACC ACGTACAACT GAAACTTTAT ACGCTGGTCT TCAATACATT
AAACCTGGTG AAGTTGCTCC AGCACACAGA CATGTTGCCT TTGCTTTTAG ATTCATTCTT
GAGGGACAAG GTGGATTTAC TAATGTTGAA GGTACAAGAA TGACTATGAA GAGAGGTGAT
GTGCTTTTGA CCCCAAGAAA CTGCTGGCAC GATCACGGTA AGGACGGAAG CGGTCCAATG
ATCTGGTTGG ATGGTTTGGA CTTGCCAATT TTCCAAACTA TTCCAGTCAA CTACACTAAC
CACTACGAAG AAGATAGATT CCCAGCAGTT GACAATGATA ATACACCAAT GAAGTTCCCA
TGGCAACCAG TTCAAGATAA GCTTGACAGT ATTAAAGGTG ACTATGCTAT TTTCGAATAC
CGTGACCAGG AAAACCCTGA AAAATTTGTA TCTTCCATTC TCGGTGCTGA AGCTTTGAGA
ATTTCTCCAA ATGCTTCTAC TCCTGTACGT CAGGAAAACA GTTCCTTCGT TTTCTGTGTC
TACGAAGGAA AGGGTCACAC TATCGTCTAC GGTGATGATG GCGAAGAAAA TGTTTTAAAC
TGGGAAAACA GTGATGTGTT CTGTATTCCA TGTAACATGC CATTCAAGCA CTTTAACGAC
AGCAGCAATG AACAAGCCTA CCTCTTTAAC TTCTCGGACA CCCCATTGCT CAAGAACTTA
AATATCCATA GTTCCGATTT GGAAGTTAAG AACTAG
|
|---|
| Protein sequence | MAPAATPQTQ ETQDNDAFLK SMPLENVAPL WHILKDLSPP KPKPTSVPHL WNYKKLKPIL
DESGRLVPTE LAERRVLMLV NPKLTGPRTT ETLYAGLQYI KPGEVAPAHR HVAFAFRFIL
EGQGGFTNVE GTRMTMKRGD VLLTPRNCWH DHGKDGSGPM IWLDGLDLPI FQTIPVNYTN
HYEEDRFPAV DNDNTPMKFP WQPVQDKLDS IKGDYAIFEY RDQENPEKFV SSILGAEALR
ISPNASTPVR QENSSFVFCV YEGKGHTIVY GDDGEENVLN WENSDVFCIP CNMPFKHFND
SSNEQAYLFN FSDTPLLKNL NIHSSDLEVK N
|
|---|
| |