| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_54817 |
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| Symbol | YKH1.3 |
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| ID | 4836832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 1489726 |
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| End bp | 1490493 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 12 |
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| GC content | 41% |
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| IMG OID | 640388147 |
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| Product | putative short chain dehydrogenase |
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| Protein accession | XP_001382507 |
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| Protein GI | 150863880 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.176178 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.315077 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCACAG GAAAGACTTA CTTTATCTCA GGCGCAAACC GAGGAATTGG CTTTGAATTA
GCCAAACATT ACCTTGAAGC CAATCCAGAC AATATCGTTT TAGCCACTGC AAGATATCCA
GATTCTGCAA CTGCTTTGAG TGAATTAGGT GTGAAGAATT CTAACCTTCA TATTCTCAAG
TTGGATGTCT CTGATCAAGC TTCTATTGCA ACCATTGACT CGCAATTAAA AGATATCACC
GATGGTATTG ATGTCTTAAT TTCGAATGCT GGTGTCTCTC TGATCCGTGG AACGATCCTT
AGTACTCCAG CCGAAACTTG GGATAGGCTC TTAAAGGTTA ATACTGTAGG TCCAATTCTT
CTTTTCCAGG CATTGTACCC TTACTTAACT AAAAGAGTTA CCAAGAAGGT GGTTTTTATG
TCTTCGTTGT CAGGATCTAT TGCCAGTTTT AATCCAGCAT ACCCAATTGA TTCCTATGGT
CTTTCAAAGA CAGGACTTAG CTTCATTGCC AAAGCAGCCG GGGCTGAACT TGCTCTGGAA
GGCTTCATCG TGAATGCAGT TCATCCAGGT GTCGTCCTGA CCGAACGAGC AACAGTGTAC
TTCGATAAAA TAAAGGCAGA AACAAATGCT GAAGTTGCTG CCTACCTCGA TCTGTTGATG
ATTACTCCAC AAGAGTGTGC TACTTTCTTG TTGAAATTAA TTGAGGAGTT GAATGAAGAA
AAGAACGGGT CTTTCCTTAA TTATGACGGA CAAGTACTCC CATACTAA
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| Protein sequence | MTTGKTYFIS GANRGIGFEL AKHYLEANPD NIVLATARYP DSATALSELG VKNSNLHILK
LDVSDQASIA TIDSQLKDIT DGIDVLISNA GVSSIRGTIL STPAETWDRL LKVNTVGPIL
LFQALYPYLT KRVTKKVVFM SSLSGSIASF NPAYPIDSYG LSKTGLSFIA KAAGAELASE
GFIVNAVHPG VVSTERATVY FDKIKAETNA EVAAYLDSLM ITPQECATFL LKLIEELNEE
KNGSFLNYDG QVLPY
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