| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_54632 |
|---|
| Symbol | |
|---|
| ID | 4837360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | - |
|---|
| Start bp | 289516 |
|---|
| End bp | 291447 |
|---|
| Gene Length | 1932 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640388675 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001382819 |
|---|
| Protein GI | 150864116 |
|---|
| COG category | [R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5391] Phox homology (PX) domain protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.397245 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGG AAGACCAATT CTCGTCCATC CAATTGGACA GAGACGAAAT TGACAGAGAT
AAAAACAGCA ATCATGATGA CGACAAGCCT TCGACTATTG CCGAGGAAGA TGCTCTAAGC
GAACTGCAAA CACGTACAGA ACACGAACAG AGTGCTTCTG CAATAGATCC AACGACTGAA
TTCAACTCCG AGGCCCAAAT TCAAGGTATA GATGGTGAAA ATGGAAATGT AGGAAGCCCG
AATTTCGATT CAGATAATGC CAATTCGGAG TCTGTAGGCC AATCAAAGGG AAGTAACGAG
TCTGCTGGTA CAACTGTAGT TAATAGATCA AAGTCCGGGA GTTCTAGTGA TCAAAATGCC
TCGGAACCGG GACCCTCTCC AATTGTTCAG GGTTCTTCAT CTACTACCTC GGCAGTTTCT
GGAGCTAATA GAATTTCTAG TCAAGCAACA ATAACTCCGC TGGAACAAGA GAGAACTGTA
ATGTTTGAAA AGTATCGGAT TGAGTCTTCG GTGACGTCTC CTATCAACGA TTTGGATACC
GCTTCGAAAC ATTTCATTTC GTATTTGGTG ACTACCACAA CAAACCATCC GGCAGTGGTG
AAGCTTTCGT CTCACAGGTC GGCTCCAGAA GACGAGTACG TCACCATTAG TGTTCGGCGT
AGATACGGTG ATTTTTCCCT CCTTCACGAG TGTTTATCGA ACGATATTCC TACAGCCATG
ATTCCTCCAT TACCCTCTAA GTCCAACTTC AAATACTTAA CGGGTGATAC ATTCAGCACC
GAATTCGTCA ACAAACGGTT GCATTCGTTG GACAGGTTCA TGAAGTTCAT CTTGCAGCAC
AAACGATTAT CTCAGGAGTC AGTGTTCCAT CTTTTCATCA GTGACTCTAA TGACTGGGGC
AACTTCACGA AGAACTTGAA ACTTCGCGAC ATTAACTACG ACGAATCTGG GGCTGGTTCC
TCAGCCAACG GATTTGTCAA CAAAGTTGTC AACGAAGACA TGATTACGGA GAAGGTGATG
AACTACTTTA CTTCATCTAA ACACAAACGA GAAACGAACA AAGATATTCT AGAAATCAAC
GACAAGTTGA AGAAGATCTA CGAAAACCTC ATGAAGTTAG ACAAGATATT TGTCAGATTG
AACAAGAAGA ACCACGACTT AAGCATCGAT TACGATCAAT TCCTGGCACA AATCATGAAG
CTATCCTTGG TACAAACTAC AGATATGAAC TCGACCTCTG AACCATCGAC ACCCTCCAAA
AATGGCGACG CTGCTTCTGT TGTTGTTGAT TCTACTATCA CCAACAATTT CAAGATATTT
GCTGATTCCC TCGACTATCT CCTGAAGAAC TGGTCAGAAT TGCACAAATA CGTAGATGAA
ACATTTCTTG TTTCATTACG GGACTGTTCC AAATACATCA TAAGTTTAAG TAACCTCATC
GAATTTCAGC ACAACAAGAA AATCGATCTT CAGGTTTTAC AGGATTACTT GGCCAAAGCC
AGGAGCGAGT TGGCTAGTTT TGGCGGTTCG ACGGCAAGTA CAGGTGCTCG TCACCCACCT
CCTGTACCAG TATTGAATAG TCATTCTGGA GGCGGAATAG TGAATAATAC CACCCAGTTG
ATTAAAGACA CTTTGTCTAC ATCTGCGACT CCACACATAG GATCTACAGC CACGGATGGA
AAGATCGGCC GATTAGAAGA AAGGATCAAC AAATTGGAAA GTGAAATCAC CGTGCAAACG
AAGCTTGTCA ACGACCTCAC TTATAGGATA ATAAACGAAG AATATCCCAA CTGGGACAAG
TTTAACCGCA ATCAGTTGAA GGAGTCGATG GTGGGGTTAT GCGACCAGGA GATCAAGTTT
TATAAGGGGT TGGTTGACAA CTGGAGCGAT GTTGAGACCA AGTTGTTGCG GCGGTTGGAC
GAATTGAAAT GA
|
|---|
| Protein sequence | MSLEDQFSSI QLDRDEIDRD KNSNHDDDKP STIAEEDALS ESQTRTEHEQ SASAIDPTTE
FNSEAQIQGI DGENGNVGSP NFDSDNANSE SVGQSKGSNE SAGTTRTVMF EKYRIESSVT
SPINDLDTAS KHFISYLVTT TTNHPAVVKL SSHRSAPEDE YVTISVRRRY GDFSLLHECL
SNDIPTAMIP PLPSKSNFKY LTGDTFSTEF VNKRLHSLDR FMKFILQHKR LSQESVFHLF
ISDSNDWGNF TKNLKLRDIN YDESGAGSSA NGFVNKVVNE DMITEKVMNY FTSSKHKRET
NKDILEINDK LKKIYENLMK LDKIFVRLNK KNHDLSIDYD QFSAQIMKLS LVQTTDMNST
SEPSTPSKNG DAASVVVDST ITNNFKIFAD SLDYLSKNWS ELHKYVDETF LVSLRDCSKY
IISLSNLIEF QHNKKIDLQV LQDYLAKARS ELASFGGSTA STGARHPPPV PVLNSHSGGG
IVNNTTQLIK DTLSTSATPH IGSTATDGKI GRLEERINKL ESEITVQTKL VNDLTYRIIN
EEYPNWDKFN RNQLKESMVG LCDQEIKFYK GLVDNWSDVE TKLLRRLDEL K
|
|---|
| |