| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_54590 |
|---|
| Symbol | |
|---|
| ID | 4836866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | - |
|---|
| Start bp | 1252464 |
|---|
| End bp | 1255169 |
|---|
| Gene Length | 2706 bp |
|---|
| Protein Length | 901 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640388181 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001383009 |
|---|
| Protein GI | 126132968 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.900491 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCTAT TATCCTTTAA AGACAAGGTC GTGATCATCA CCGGTGCCGG TGGTGGTTTG
GGTAAGCAAT ACTCGTTAGA ATTCGCAAAG AGAGGCGCCA AGGTTGTTGT CAACGACTTG
GGTGGTTCTC TTAGCGGTCA GGGAGGAAAC TCTAAGGCTG CTGATGTCGT TGTTGACGAA
ATCAGAAAGG CTGGAGGTAT TGCTGTGGCC GACTACAACA ATGTGCTTGA TGGTGACAAG
ATTGTTGAAA CCGCTGTCAA GAACTTTGGT ACCGTCCACG TTGTCATTAA CAACGCCGGT
ATCTTGAGAG ACGCCTCGTT CAAGAAGATG CAAGAGAAGG ACTTCCAACT TGTCCTTGAT
GTCCATCTCA ATGGTGCCTT CAAGGTGACC CAGGCTGCTT GGCCATACTT CAGAAAGCAG
AACTACGGTA GAATCGTCAA CACTGCTTCC CCAGCTGGTT TGTACGGTAA CTTTGGCCAA
ACCAACTACT CTGCTGCCAA GGCTGGTTTA CTTGGTTTCG CTGAGACATT GGCTAAGGAA
GGTGGCAAGT ACAACATTCT TGCCAACACC ATTGCTCCAT TGGCCCGTTC AAGAATGACC
GAATCTATCA TGCCTCCATC TATCTTGGAA AAGATGAGTC CAGAAAAGGT CGCTCCTATT
GTGCTCTACT TGGCTTCCCA GAACAACGAG ATTACTGGAC AAACTTTTGA AATTGCTGCT
GGCTTTTACT CTCAAATTAG ATGGGAAAGA TCTGGTGGTG TTCTCTTCAA GCCAGACCAA
TCTTTTACTG CCGAATCTGT GGCTAAGAGA TTTGACGAAA TCTTGAACTT TGATGATTCC
AAGAAGCCAG AGCTCTTAAA GAATCAACAC CCTAACTTGT TGAACGATTA CCTCAGTTTG
ACGGAAGCTG CTAGAGCATT GCCTCCTAAT GATAACAGCG GAGCTCCTAC CGTTTCATTG
AAGGGTAGAG TCGTATTGAT CACAGGTGCC GGTGCCGGTT TGGGCAAAGA GTATGCCAAG
TGGTACGCCA GGTACGGTGC CAAGGTCGTG GTTAATGACT TTAAAGACGC TTCCAAGACT
GTGGAAGAGA TTAAGGCTGC TGGTGGTGAA GCCCATGTAG ACCACCATGA TGTTGCTACC
CAGGCCGAGG CTATCATCAA GAATGTCATT GACAAATACG GAACCATTGA CATCTTGGTT
AACAACGCTG GTATATTGAG AGACAGATCT TTCGCCAAGA TGAGCTACGA TGAATGGATT
CAAGTTCAGA AGGTCCACTT GTTAGGTACT TTCAACTTGA CTAGATTGGC CTGGCCATAC
TTCTCTGAGA AGAAGTTCGG TAGAGTCATC AACATCACCT CTACCTCTGG TATCTATGGT
AACTTCGGAC AAGCAAACTA CTCTTCGGCC AAGGCTGCTA TCTTGGGTTT GACAAAAACC
ATTGCCATCG AAGGTGCCAA GTCCAACATT AAGGTTAACG TTGTTGCTCC TCATGCTGAA
ACTGCTATGA CCTTGACTAT TTTCAGAGAA GAAGACAAGA ACTTGTACCA CCCAGATGCT
GTCGCTCCTT TGTTGGTCTA TTTGGCTAGT GAAGATGTTC CAGTTACCGG TGAAATCTTT
GAAATCGGTG GAGGCTGGAT CGGTAACACC AGATGGCAGA GATCTAAGGG TGTTGTAGCT
AAAACTGATG CAGACGTGAC TGCTGAATTC GTCAATGCTC ACATTGAAGA AATCATCGAC
TTCGAATCGG GCTCCACCAA CCCAAAGAGC ACCACCGAGT CTTCTATGGA GATCTTGTCT
GCTATTGGTG GCGACGACGA TGAAGATGAA GATGAGGAAG AAGAAGAAGA TGAGGACGAT
GACGATGACA TTGTGGACCC TGTCTGGCAC TACAATGACA GAGACGTCAT TCTCTATAAC
ATCGCGCTTG GTGCAACTGC TAAAGAGTTG AAGTACGTCT ACGAAAACGA CGCCGACTTC
CAGGTCATTC CAACCTTTGG TCACTTGGCT ACGTTCAATT CTGGCCAATC TCAGCTTACG
TTCGCAAGAT TGTTGAAGAA TTTCAACCCT ATGCTTTTGT TGCATGGTGA ACACTACATC
AAGCTTCATA AGTTCCCTGT CCCAGTTGAA GCTTCCATCA AGACTACCTT CCAACCTATC
AACATTACCC AGAAGGGCAC CAACACCGTC GTTGTACATG GTTCTAAGTC TACTGATGCC
ACCACCGGTG AAGTTGTGTT TGAAAACGAG GCCACATTCT TTATCAGAAA GTGTGAAGGT
AAGAATAAGA CCTATGCTGA AAGACGTAAA TTTGCAACTC TTCCTTTCAC TGCTCCAACC
TCTGCTCCTG ACTTTGTCAC TGAAATTAAG ATCTCAGAAG ACAAGGCATC TTTGTACAGA
TTGACAGGTG ACAGAAACCC ATTGCACATT GACCCTAACT TTGCCAAGGG TGCCAAGTTC
GACAGACCTA TTTTGCACGG TATGGCTACC TACGGTTTGT CTGCAAAGGT TTTGTTGGAC
AAGTTTGGTC CTTTTGATGA AATCAAGGCA AGATTTACTG GAATTGTTTT CCCTGGTGAA
ACTTTGAAGG TTTTGGCATG GAAGCAAGGT GATGTGGTTA TTTTCCAATC TCACGTTGTC
GAAAGAGGTA CCATCGCTAT CAACAACGCT GCTATCAAGT TAATCAACAA TACTGCCAAC
CTTTAG
|
|---|
| Protein sequence | MSLLSFKDKV VIITGAGGGL GKQYSLEFAK RGAKVVVNDL GGSLSGQGGN SKAADVVVDE
IRKAGGIAVA DYNNVLDGDK IVETAVKNFG TVHVVINNAG ILRDASFKKM QEKDFQLVLD
VHLNGAFKVT QAAWPYFRKQ NYGRIVNTAS PAGLYGNFGQ TNYSAAKAGL LGFAETLAKE
GGKYNILANT IAPLARSRMT ESIMPPSILE KMSPEKVAPI VLYLASQNNE ITGQTFEIAA
GFYSQIRWER SGGVLFKPDQ SFTAESVAKR FDEILNFDDS KKPELLKNQH PNLLNDYLSL
TEAARALPPN DNSGAPTVSL KGRVVLITGA GAGLGKEYAK WYARYGAKVV VNDFKDASKT
VEEIKAAGGE AHVDHHDVAT QAEAIIKNVI DKYGTIDILV NNAGILRDRS FAKMSYDEWI
QVQKVHLLGT FNLTRLAWPY FSEKKFGRVI NITSTSGIYG NFGQANYSSA KAAILGLTKT
IAIEGAKSNI KVNVVAPHAE TAMTLTIFRE EDKNLYHPDA VAPLLVYLAS EDVPVTGEIF
EIGGGWIGNT RWQRSKGVVA KTDADVTAEF VNAHIEEIID FESGSTNPKS TTESSMEILS
AIGGDDDEDE DEEEEEDEDD DDDIVDPVWH YNDRDVILYN IALGATAKEL KYVYENDADF
QVIPTFGHLA TFNSGQSQLT FARLLKNFNP MLLLHGEHYI KLHKFPVPVE ASIKTTFQPI
NITQKGTNTV VVHGSKSTDA TTGEVVFENE ATFFIRKCEG KNKTYAERRK FATLPFTAPT
SAPDFVTEIK ISEDKASLYR LTGDRNPLHI DPNFAKGAKF DRPILHGMAT YGLSAKVLLD
KFGPFDEIKA RFTGIVFPGE TLKVLAWKQG DVVIFQSHVV ERGTIAINNA AIKLINNTAN
L
|
|---|
| |