| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_54312 |
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| Symbol | SLH1 |
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| ID | 4836784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 855815 |
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| End bp | 861643 |
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| Gene Length | 5829 bp |
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| Protein Length | 1942 aa |
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| Translation table | 12 |
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| GC content | 43% |
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| IMG OID | 640388099 |
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| Product | DNA-directed DNA polymerase |
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| Protein accession | XP_001382938 |
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| Protein GI | 150864206 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1204] Superfamily II helicase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.300419 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.259296 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATCTT ACACGGTCAA TTCGACCAAG TCGTACATGC AGGCAATGCA GCCTATGATC
GAAATGTTGA ACAGTCTTAC TGGGACGCTG GTCTCAGAAT CAGTCACTAG AAGTCCTCCA
TCCATAGACA ATGAAAACGT GAAGATCACA CCCTTGGACA AGATTCTAGG CCAATTTGAA
GATGTTTCTA CCGATTTATT AGACCAGATT GGCATTGGCG GACCGGAAGC TGATAATGCG
GCTGTTTTAA GAGAAATTGA ACAGGAATGT AGTCGGATAA GCAAAGCTAG AGGACAGGAC
TCGAATGAAA TATTAGCTAT AATCAAGACA ACATTGTCAG ACGAAGTTGG AGAGGAACAG
CTCCAGTCGT CTTTGTTTGA TATTTTAGGT TTTGAGGAGT TTGAGTTGAT CGGAAAAATC
GTTCAGAACA AACAAGTAGT AATAGGCGAA AAGCAGCAAG ACGATATAGA TACTGAGCCG
AAGTTGCTCA CCGCCGCCGA ACGGGCCCAG TTGTTGATAG ATAACCACCA GAAGACGAAA
AACCAGAAAC TCGCACCCAA GAGTTTAACG CAGCAGTATC CAAATGTGTT CAAAAATCCT
GATGTAGGCA ATATGATTTC TGTCACGGGC AAGAAATTCT CACTTCCAGT AGGTACTACC
AGAGAATCGC ATGCCACACA CGAGGAAATC ATTATACCTT ACCCTGAGCA GAAGGCCAAC
AGATGGATCC TGGACTCGAA CCTCGTCAAA GTTTCTCAGT TGGATTTTCT CTGTCAGGGC
ACGTTTAAGA ACTACCAGAC ATTGAACAAG ATGCAGAGTT TGGTGTATCC TGTAGCATAC
AACACCAATG AAAACATGTT GGTGTGTGCC CCTACTGGTG CTGGTAAAAC AGATGTTGCA
TTGTTGACGA TTTTGCATTG TATAAACCAG TTTGTAACAG AAACTGTGAG TGACGAAGGC
GACGTCACCG TAGATATTGA TTACGACGAG TTTAAGATTG TCTATGTGGC ACCGCTCAAA
GCATTGGCAG CAGAAATTGT AGAAAAGTAC AGTAAGAAAC TCCAATGGCT TGGTATTAAT
GTGAGGGAGT TGACAGGTGA TATGCAATTG TCCAGGGCAG AGATTATGAC AACTCAGATC
ATTGTCACTA CGCCTGAGAA ATGGGACGTA GTAACAAGAA AGCTGAACGG TGATTCAGAA
TTGGTGTCGA AAGTTAAATT GCTTATTATA GATGAAGTCC ACTTGTTACA CGAAGATAGA
GGTTCAGTTA TCGAGACATT GGTGGCACGT ACCTTAAGAC AGGTGGAAAG CTCGCAACAG
ATGATTCGGG TGATTGGTCT TTCAGCTACG TTGCCCAACT TTATGGATGT AGCTGATTTT
TTGGGAGTAA ATAGAAACAT CGGGATGTTT TACTTTGACC AGACGTTTAG ACCCGTACCT
TTGCAACAGC AGCTTATAGG TGTAAGAGGT AAATCCGGAT CCAAGATAGC TCGAGAGAAC
ATCGATAAGG TATCGTATGA GAAGTTGGCC GATTACGTCA ACCAGGGCTT ACAGGTAATG
GTGTTTGTGC ATTCTAGAAA AGATACTGTC AAATCGGCTC GTACATTTAT ACAGATAGCA
CAAGACCATC AGGAACTAGG CATCTTTGAC ACTTCTGGAA CAGAAGCTTA CCAGAAGTAC
AGCAGAGAAG TATCCAACAA GAACAGAAAC AAAGACATGA AAGAGTTATT TCAAAACGGA
TTTGGAGTCC ACCATGCTGG AATGCTTAGA ACGGATCGTA ATCTCACTGA GAGGATGTTT
GAAAGTGGTG CTATAAAGGT ATTGTGCTGT ACTGCTACAC TTGCATGGGG TGTCAATTTG
CCTGCTGCTG TAGTTATTGT AAAAGGCACA CAGGTCTACG ATTCGAAACA GGGTGGTTTT
ATAGATTTGG GAATTTCTGA CGTTATTCAA ATCTTTGGTC GTGCTGGTAG ACCACAGTAC
GAAAAGTTTG GTACGGGTAT TCTTTGCACC ACCAGCGACA AATTAGACCA TTATGTTTCA
TTGATCACAC AGCAACATCC TATAGAGTCT AAACTAGCAG AAAAGATTAC AGACAATTTG
AATGCCGAGA TCTCGTTGGG CACTGTGACC AACATCGACG AAGGGGTACA ATGGCTAGGC
TACACGTATA TGATGGTGAG AATGCGCCAG AATCCATTTG CATATGGTAT CGACTGGAAG
GAGCTCAAGG AGGATCCTTT GTTGACCAAC AGAAGACGAG AAATGATCAT CACAGCTGCT
AGAAGATTGC ATTATCTTCA AATGATTATC TTTGAAGAAA ACTCGGGTTC CTTTACAGCC
AAAGATTTGG GCAGAATTGC TTCTGACTTC TACTTGTTGA ACAACTCAGT GGAAATTTTC
AATCAGATGC TTAATCCAAA GGTGACGGAA GCCGATGTCT TGTCTATGAT AAGTATGAGC
AGTGAATTCG ACAGCATCAA GTTCCGTGAG GAGGAGTCTG AAGAATTGAA GAAACTCTTG
GAAAACGACT CCCCTTGTCA AATAGCTGGA GATGTCGAGT CGACTCAAGG TAAGACAAAT
ATCTTGTTAC AAGCCTTCGT GTCTCAGGCC ACCATCAAAG ACTCTGCTTT GATCTCGGAT
TCCAACTACG TAGCTCAGAA CTCAGCTCGT ATTTGTAGAG CTTTGCTTTT GGTAGGTATA
AATAGACGCT GGGGTACGTT CATGAAGATT ATGTTATCGA TTTGCAAGTC TATCGACAAG
CGAATCTGGG CTTTTGAACA CCCATTGTCG CAGTTTGATT TGCCAGAAAC AGTTTTGAGA
AACATAAGAG CCAAAAATCC CTCGATGGAA ACTCTCAGGG ATATGGAATC GGCTGAACTT
GGAGACCTTG TCCATAATAA TCGTATGGGA AATGTCTTGT ACAAATTGGT AGGCAGATTC
CCCTACGTGG ACATCTTTTC TGAGATCTTT CCTATAACCA GTAATGTGAT GAGAGTTCAT
GTCAGTTTGG AGCCTGACTT TGTGTGGGAC GAAAGATATC ATGGGAATGC ACAAATATTC
TGGTTGACCG TTGAAGAGTC TGACCAGTTT GAGATTTTGC ATGTAGAAAA ATTCATCTTG
AACAAGAAGC AGATGAGAAG TCCTCATGAA ATGGACTTTA TGATTCCTTT GACAGACCCA
TTGCCTCCTC AGATCATTGT AAGGCTTGTG TCTGATTCAT GGATTGGTTC TGAAAGTGTT
CATGCCATTT CTTTCCAGCA TTTGATCAGA CCTTCCAACG AAACATTGAG AACCAATCTA
TTGAAGTTGC AACCATTGCC CATTACAGCC TTACACAATC CTGAAGTGCA GGCCATTTAT
GACAAGAAGT TCCGTTACTT CAATCCAATG CAAACGATGA CTTTCCACTC TTTGTATAAC
GACAACTCCA GTGTATTTGT AGGTTCTCCA ACTGGTTCTG GTAAGACTGT CGTCGCAGAG
TTGGCCATCT GGCATGCTTT CAAGCAGTTT CCCGGGTCCA AGGTTGTCTA TATTGCTCCG
ATGAAAGCAT TAGTCAGAGA AAGAGTGGAT GATTGGAGAG CTAGAATATG TAAGAATACC
AGCTACAAGT TGGTAGAATT AACGGGTGAC TCGCTACCGG AAGCTAAGGA GGTTAGAGAG
GCAGATATCA TCATCACGAC TCCTGAAAAA TTCGATGGTA TATCACGTAA CTGGCAAACC
AGAAAGTTTG TTCAGCAGGT TTCGTTGGTG ATAATGGATG AAATACATTT ACTTGCCAGC
GATCGTGGAC CAATTTTGGA GATGATTGTT AGTCGTATGA ACTACATTTC ATCACAGACG
AAGATGCCCA TTCGTCTTTT GGGCATGTCT ACTGCTGTTT CCAATGCCTT TGACATGGCT
GGCTGGTTAG GAGTGAAACA AGGTTTGTTC AACTTCTCTT CTTCTGTACG TCCGGTTCCA
TTGCAAATGT ATATCGATGG TTTTCCTGAC AACTTGGCTT TCTGTCCATT GATGAAGACA
ATGAACAAAC CCGCATTCAT GGCAATCAAG CAACATTCGC CTTCTAAGCC AGTGTTGATC
TTTGTGGCTT CCCGTAGACA AACCAGACTC ACTGCTTTAG ATCTTATTCA TTTGTGCGGT
ATGGAGTCCG ACCCTCGTCG CTTCTTGAAG ATGCCTGAGT CTGAATTGGA AGAAGTCCTA
GCAGATGTCA AGGATGACAC TTTGAGATTG TCGTTGCAGT TTGGAATGGG CTTGCATCAT
GCTGGTTTGG TAGAATCTGA TCGTCAAATC TCACACAAGT TGTTTGAAGC AGGCAAGATT
CAGATTCTTA TTGCAACTTC TACTTTGGCT TGGGGTGTTA ATTTACCTGC TCATTTAGTT
ATTATCAAGG GTACCCAGTT CTTTGACTCC AAGATCGAAG CGTATAGGGA CATGGACTTG
ACAGATATTT TGCAAATGAT GGGTAGAGCT GGTCGTCCTG CTTTCGATAC TTCTGGTATT
GCAATTGTGT ATACCAAAGA GTCCAAGAAG ATGTTTTATA AACATTTTTT GAATGTGGGT
TTCCCGGTGG AATCGTCCTT GCACAAAGTG TTGGATAACC ACATTGGTGC CGAGATATCT
GCTGGAACTA TCTCTACCAG ACAAGAAGCT ATGGACTTCT TGACATGGAC CTTCTTGTAC
AGAAGAGCCC ATAACAATCC TACTTATTAT GGTATCGAGG ATACTACCAC TGCTGGGGTT
TCCCAGTTCT TGAGTGATTT GATCGACGAT ACGATTGAGA ATTTAATGGA ATCGAAGTGT
GTGCTCCTAG GTGGCAAAGA TGAGCTTATT CCTACTGCCT TCTTGCATAT ATCATCTTAT
TACTATCTTT CTCATAAGAC TATTAGAAAT GCTGCTAACA ACCTCAAAAA GGATTCCAGT
TTCAGAGACT GTTTGAGATT ACTCTGTGAA GCTGCTGAAT ACGACGAATT GGCTACACGT
CACGGTGAGG AGTTGATCAA CATGGAAATG TCTCAGGCTA TGAGATTTCC TGCTGAAGAC
TTGGAATGTG AGTATATTTG GGATCCTCAC GTCAAGGCTT ACTTGTTGAT TCAGGCTTTC
ATCAGCAGGG TCGAACTTCC AATTGCCGAT TATGCCCAGG ATACTGTTTC TGTGTTAGAC
CAGGCATTGC GTATTTTGCA GGCACTAGTG GATACAGCGT CAGAGCTTGG ATACTTGACG
ACTGTGTTGA ATTTAATAGA GTTGATTCAG TGTCTCAAGC AACGTTATTG GTTTGATGAT
GATCCTATTT CGGCATTGCC AGGGTTGCAC GTATTTTCCA GCTCAGAAAA TTCCAGAACG
GACTTGGAGG CGCTTGGAAA AATGAATACT GGAAAACTCT TTAAGTTTGC TGAGACTATC
GGCGTTAAAG GTTCACAAAT GCATTCTACT TCTCCGGAAG AAGTCTTCAC TGATGATGAT
GCTAAGAAAG AGTTTGTAAG AATTGCTTCC CATTTGCCTA CCGGAGAGCT CTTTACTTCT
CAGAGAGACT CCGGTTCATT GAAGGTGGAA ATTGTGCACA ACAACTACCC ACTCAACAAG
GAATTCAAGA TGTACTGTCC CCATTTTCCC AAGATGCAAA GAGAGTCTTG GTTTATCATT
GTCTGTGATG AGGTTGGAGA TGAGTTGCTT TTGATCAAGA GGTCCTCGCC TATAATGCTG
TCAAAGAAGG GTGTAGTTTC TTGTTCGTTG GATATCCCCG ATGATTTGAA GGGAAGAGAA
GTCACAATCT TGTGTGTCAA CGATGCTGTC AAGATCAGTT ACAGCGCCAA GGTGACACTT
GGTATTTAG
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| Protein sequence | MASYTVNSTK SYMQAMQPMI EMLNSLTGTS VSESVTRSPP SIDNENVKIT PLDKILGQFE
DVSTDLLDQI GIGGPEADNA AVLREIEQEC SRISKARGQD SNEILAIIKT TLSDEVGEEQ
LQSSLFDILG FEEFELIGKI VQNKQVVIGE KQQDDIDTEP KLLTAAERAQ LLIDNHQKTK
NQKLAPKSLT QQYPNVFKNP DVGNMISVTG KKFSLPVGTT RESHATHEEI IIPYPEQKAN
RWISDSNLVK VSQLDFLCQG TFKNYQTLNK MQSLVYPVAY NTNENMLVCA PTGAGKTDVA
LLTILHCINQ FVTETVSDEG DVTVDIDYDE FKIVYVAPLK ALAAEIVEKY SKKLQWLGIN
VRELTGDMQL SRAEIMTTQI IVTTPEKWDV VTRKSNGDSE LVSKVKLLII DEVHLLHEDR
GSVIETLVAR TLRQVESSQQ MIRVIGLSAT LPNFMDVADF LGVNRNIGMF YFDQTFRPVP
LQQQLIGVRG KSGSKIAREN IDKVSYEKLA DYVNQGLQVM VFVHSRKDTV KSARTFIQIA
QDHQELGIFD TSGTEAYQKY SREVSNKNRN KDMKELFQNG FGVHHAGMLR TDRNLTERMF
ESGAIKVLCC TATLAWGVNL PAAVVIVKGT QVYDSKQGGF IDLGISDVIQ IFGRAGRPQY
EKFGTGILCT TSDKLDHYVS LITQQHPIES KLAEKITDNL NAEISLGTVT NIDEGVQWLG
YTYMMVRMRQ NPFAYGIDWK ELKEDPLLTN RRREMIITAA RRLHYLQMII FEENSGSFTA
KDLGRIASDF YLLNNSVEIF NQMLNPKVTE ADVLSMISMS SEFDSIKFRE EESEELKKLL
ENDSPCQIAG DVESTQGKTN ILLQAFVSQA TIKDSALISD SNYVAQNSAR ICRALLLVGI
NRRWGTFMKI MLSICKSIDK RIWAFEHPLS QFDLPETVLR NIRAKNPSME TLRDMESAEL
GDLVHNNRMG NVLYKLVGRF PYVDIFSEIF PITSNVMRVH VSLEPDFVWD ERYHGNAQIF
WLTVEESDQF EILHVEKFIL NKKQMRSPHE MDFMIPLTDP LPPQIIVRLV SDSWIGSESV
HAISFQHLIR PSNETLRTNL LKLQPLPITA LHNPEVQAIY DKKFRYFNPM QTMTFHSLYN
DNSSVFVGSP TGSGKTVVAE LAIWHAFKQF PGSKVVYIAP MKALVRERVD DWRARICKNT
SYKLVELTGD SLPEAKEVRE ADIIITTPEK FDGISRNWQT RKFVQQVSLV IMDEIHLLAS
DRGPILEMIV SRMNYISSQT KMPIRLLGMS TAVSNAFDMA GWLGVKQGLF NFSSSVRPVP
LQMYIDGFPD NLAFCPLMKT MNKPAFMAIK QHSPSKPVLI FVASRRQTRL TALDLIHLCG
MESDPRRFLK MPESELEEVL ADVKDDTLRL SLQFGMGLHH AGLVESDRQI SHKLFEAGKI
QILIATSTLA WGVNLPAHLV IIKGTQFFDS KIEAYRDMDL TDILQMMGRA GRPAFDTSGI
AIVYTKESKK MFYKHFLNVG FPVESSLHKV LDNHIGAEIS AGTISTRQEA MDFLTWTFLY
RRAHNNPTYY GIEDTTTAGV SQFLSDLIDD TIENLMESKC VLLGGKDELI PTAFLHISSY
YYLSHKTIRN AANNLKKDSS FRDCLRLLCE AAEYDELATR HGEELINMEM SQAMRFPAED
LECEYIWDPH VKAYLLIQAF ISRVELPIAD YAQDTVSVLD QALRILQALV DTASELGYLT
TVLNLIELIQ CLKQRYWFDD DPISALPGLH VFSSSENSRT DLEALGKMNT GKLFKFAETI
GVKGSQMHST SPEEVFTDDD AKKEFVRIAS HLPTGELFTS QRDSGSLKVE IVHNNYPLNK
EFKMYCPHFP KMQRESWFII VCDEVGDELL LIKRSSPIMS SKKGVVSCSL DIPDDLKGRE
VTILCVNDAV KISYSAKVTL GI
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