| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_54239 |
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| Symbol | SPH1 |
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| ID | 4837053 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 1765295 |
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| End bp | 1766881 |
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| Gene Length | 1587 bp |
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| Protein Length | 521 aa |
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| Translation table | 12 |
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| GC content | 43% |
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| IMG OID | 640388368 |
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| Product | Sphingosine kinase, involved in sphingolipid metabolism Lipid transport and metabolism |
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| Protein accession | XP_001383107 |
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| Protein GI | 150864335 |
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| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1597] Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0415674 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTCC ATAATAATCT CAGCACAGAA AGGCTCATAT ACCACCAGCA GGACTCCATA
CGCGCGACGC TTCAAGACTT CGGGATCCAG ATTGATTCCC AGGAATTGCT AGCAATTGAG
GATGACTCTG TGGACAGTAC ATATTCATTT TGCAGCTGGA AATCTGCACC CGGTCCGGCT
TACGAGTTGG AAGATAACCG TTCAAGAATT CCATACAGAA ACATCCTCTG GGTACAGCCT
GTCATTGATG AAACGGGCCA GGTCCAAGAA GACGACTTGG AAATCACATA CGTCAAACCA
AAGGGCAAGT TGTCGCTCGA GCCAGTCACC TTGCGTATTC TGATCCAAAA CTACCGTGCT
CTCTATAACA ATCTCCAGGA ATTATCTAAT TCAATACTAG CTAAATCCTA CAAGAACCAT
ATCGTGAAAC CGTCAGTCTT GGTGATTATA AATCCTCACG GTGGTCAAGG AAAGGCTTTG
AAGATCTACA ATACGGAAAT AAAGCCAATT TTAAAGGCGG CCAGAGCCAA GATTACTATT
CAGGAAACAA GTTACCACAA GCATGGAATC GATATCGGGC GTGAACTAGA TATCTCCAAG
TACGATGTAA TAGCATGTTG TTCAGGAGAT GGAATCCCGC ATGAAATCAT TAACGGTTTT
TACGAAAGGC CAGATAAGGG CGTGTCTGCT TTCAACAAAA TAGCCATCAC CCAACTTCCG
TGTGGCTCTG GTAATGCCCT TTCTCTCAGT ACCCATGGAA GTAATGATGC TTCCATGGCT
ACTTTTCATA TGTTAAAGGC AAAGAGAACT AAGCTTGACC TCATGGCTGT GACTCAAGGT
GTAGGTCCTA ACGAGAAAAT CAAGTTATCC TTCTTGACGC AATGTTATGG TGTTATTGCG
GATGCTGATA TTGGCACGGA ACATTTGAGG TGGATGGGGG CGATCAGATT TGATGTTGGG
GTTTTACACG GTATTTTGGC AAGAAGAAAG TTTCCCTGTG AATTGTATGT CGATTTCTTG
ACCAATTCAA AACAAGAACT CTCTGCCCAT TTCGACACTT ATCACCAGAA TTCAAATTCG
ACAGCAGCTC GCATAGAACA TCATTCACAA GATGATGGTG AATTGCCACT ATTGAATGAA
GAGCGGTTGC AAGTCAAGGG ACCAAAATTG AACCATCCAC CACCTGAATC ATGGACTAAA
ATAAGCCAAA ACATATCGGA CAATGTCAAC ATTCTCTACG TAGGTAAGAT GCCATATATT
TCCAACGATG TCCAGTTTTT TCCAGCAGCT CTACCAAATG ACGGATCTAT GGACATGATC
CTCACAGATA CTAAAACCTC TGTAATGGAA ACCGCTTCCA TTCTCATGTC CTTAGACAAG
GGATTGCATG TTCATAACGA AAAAGTACAT CATGCTAAGA TTTCGTCTTA CAGATTGATT
CCAAAGATAC CGCGGAATGA GCAGCATTAT ATTTCAGTGG ATGGAGAAAG TTTTCCATTC
GAACCGTTAC AGGTCGAAGT TCTACCAGGA GTACTCACGG GCTTGCTACA AGGTGGAAAT
TTTGTTGATA CGTGCTTTTC ACGTTAG
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| Protein sequence | MTLHNNLSTE RLIYHQQDSI RATLQDFGIQ IDSQELLAIE DDSVDSTYSF CSWKSAPDNR
SRIPYRNILW VQPVIDETGQ VQEDDLEITY VKPKGKLSLE PVTLRISIQN YRALYNNLQE
LSNSILAKSY KNHIVKPSVL VIINPHGGQG KALKIYNTEI KPILKAARAK ITIQETSYHK
HGIDIGRELD ISKYDVIACC SGDGIPHEII NGFYERPDKG VSAFNKIAIT QLPCGSGNAL
SLSTHGSNDA SMATFHMLKA KRTKLDLMAV TQGVGPNEKI KLSFLTQCYG VIADADIGTE
HLRWMGAIRF DVGVLHGILA RRKFPCELYV DFLTNSKQEL SAHFDTYHQN SNSTAARIEH
HSQDDGELPL LNEERLQVKG PKLNHPPPES WTKISQNISD NVNILYVGKM PYISNDVQFF
PAALPNDGSM DMILTDTKTS VMETASILMS LDKGLHVHNE KVHHAKISSY RLIPKIPRNE
QHYISVDGES FPFEPLQVEV LPGVLTGLLQ GGNFVDTCFS R
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