Gene PICST_54152 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_54152 
SymbolFTH1 
ID4837614 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp1385277 
End bp1386578 
Gene Length1302 bp 
Protein Length433 aa 
Translation table12 
GC content43% 
IMG OID640388929 
Productiron permease 
Protein accessionXP_001383033 
Protein GI150864280 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0672] High-affinity Fe2+/Pb2+ permease 
TIGRFAM ID[TIGR00145] FTR1 family protein 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.59997 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCAAA CTTTCGAGGA TTACTTCTCT ATTCAGGCGT TTCTCATCGT CTTGAGAGAA 
ACTTTGGAAC TGGCAATCAT TATCTCGGTA TTGCTTGCCT TTCTCCACCA AAGTTTCAAG
AGCGGAAACT TTACCTCCAC GCCAGACAAA AAGAAACATC GTAATGGATC ATACAGAAGT
ACGTCTGAAG CCTTACTTGT ACCAGAAGGT TCCTCTTCTA GTGCCGAAGA AGAGCAACAA
GAAGTAGATA CTGATAGCAT ATACCGTTAT TTGAAGCTCC AGATATGGGT AGGTGGATTC
TTGGGTCTTG TAGTATGCTT ACTAGTGGGA ACTGTAATCT TGGGAGTCTT CTACATCTTG
GGACAAGATC TTTGGGCAGT AGCAGAGCAT TACTGGGAGG GTACATTTTC CATTTTGGCT
AGTATCATCA TTTCAATCAT GGGAATCAAG ATCCTTCGTA TCAACAAGAT GCAAGAGAAA
TGGAAGTATA AGTTGTCAAC ATTGATTCAT AACTCAGACT ACTTAAACAA GGCTGTGAGG
GGACATAGGG AAAGGAACAA CTTGAACATA GAGAACCAAA CCTGGTCTTC CAAGTTGGCA
TTATGGTCCG AAAAGTACTC CATGTTTATC TTGCCCTTCG TCACCACCTT GAGAGAAGGT
ATGGAAGCCA TCGTCTTTAT TGGTGGTATT GGTATCAACG AAAACACTTC CTTGGTAGCA
CTTGTAAACT CAGTTGTTCT TGCTATCATC ATTGGAAGTT TCATTGGTGT GTTATTATAC
AGATCAGGAA ACACCTTGTC TTTGCAATGG TTCTTGATCA CTTCGACATG CTTTTTGTAC
TTGGTGGCAG CAGGCTTGTT CTCCAAGGGA ATCTGGAATT TCGAATTACA ACACTTCATC
AATCTTTGTG ATGGATTTGA TGTCAGCGAA ACTGGACATG GTCCTGGTTC GTATGATATA
GCTACCAGCG TTTGGCATGT CAACTGCTGC AACGGAGAAT TGCAAGATGA TGGCGCATTT
TGGATGATGT TCACAGCCGT TTTTGGATGG ACTAACTCAG CCACTTACGG AAGCGTCATT
GGATACAATT TGTACTGGTT AGTAGTCATA ATTACCTTCA CTTCATTATT GTTCGAAGAG
AAGTACGGAA GATTACCGTT GATCCCGGTA GAATGGCAGC AGAGGAGAAT AAACAAGAGG
TTAAGCGCAT ACCAGCCATT AACCGTCCCT GAAGCCGCAG TTCTTGATAC CATCCGGGAA
AGCCTTGACA GCGTTAGCTC CGAAACTCCC TTGAACCAGT AG
 
Protein sequence
MAQTFEDYFS IQAFLIVLRE TLESAIIISV LLAFLHQSFK SGNFTSTPDK KKHRNGSYRS 
TSEALLVPEG SSSSAEEEQQ EVDTDSIYRY LKLQIWVGGF LGLVVCLLVG TVILGVFYIL
GQDLWAVAEH YWEGTFSILA SIIISIMGIK ILRINKMQEK WKYKLSTLIH NSDYLNKAVR
GHRERNNLNI ENQTWSSKLA LWSEKYSMFI LPFVTTLREG MEAIVFIGGI GINENTSLVA
LVNSVVLAII IGSFIGVLLY RSGNTLSLQW FLITSTCFLY LVAAGLFSKG IWNFELQHFI
NLCDGFDVSE TGHGPGSYDI ATSVWHVNCC NGELQDDGAF WMMFTAVFGW TNSATYGSVI
GYNLYWLVVI ITFTSLLFEE KYGRLPLIPV EWQQRRINKR LSAYQPLTVP EAAVLDTIRE
SLDSVSSETP LNQ