Gene PICST_5279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_5279 
Symbol 
ID4837314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp915862 
End bp916947 
Gene Length1086 bp 
Protein Length362 aa 
Translation table12 
GC content45% 
IMG OID640388629 
Productpredicted protein 
Protein accessionXP_001382416 
Protein GI126131782 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
AGTTCGTGCC CAATTGATAT CCCTTTTACT TGCACCAACT CCACGCCAAT TGAAAACTCG 
TGCTGCTTTG AAAGTCCAGG AGGTGTCTTT GTCGCTACTC AGTTTTGGGA CTATTACCCT
GCCATTGGAG ACAACGATTC GTGGACTTTG CACGGCTTGT GGCCCGATAA CTGCGATGGG
TCTTGGGAAG AGTTCTGTGA CGACTCGCTC AATGTCGACT CCAGGATCAA GCCTATCTTA
GTTGACCAGT TCAAAGATCC CGAATTGTAT GAAAAGATGG CCAGAAGCTG GAAAAACTTC
AATGGCGACG ACGAAAGCTT GTGGACTCAT GAGTTCAACA AACATGGAAC TTGTGTCAGA
ACCATTCGCC CAAAATGTTA CTACAACTTC AAGCAACACC AGAATATCTA CGACTACTAC
AAGATTGCCG TTTCGACCTA CGAAAAATTA CCAACTTACG ATTTTTTTGC TCAAGAAGGG
ATTGTTCCGT CAGACACGGA AACTTATTCC AAGAAGCAGA TTGACGATGC TCTTACCAAA
CACTTTGGAT ATCCAGTCTA TTTCAAGTGC AACAAGTTTA ACGCTCTCCA GGAAGTCTGG
TACTTCCACC ATTTGAAAGG CTCGATCAAA GGCGAAGAGT TTAGTAGAAT TTCTCGTTTG
AATGAGCCCA GATGCCCCGA ATCGGGCATC AAGCTTTATC CAAAGGGCTG GAAACCTCCT
ACTGTTCCAC ATCCTCCCAA CCCTCCAACT GGTGGCGACA GAGGGTTCAT CAAGTTGCCC
AACCATCCAG GATGTCTTAT ATCCAATGGC CATTGGTACC AATATGGTAC TTGTGCTACT
TACCAGTTAG TCAAATCAAC TTTTGGAGGT ATCAACTTAA AAACATCAAA GGGCTTCTGT
GGATTCGATA GCTTGGGCCA GTTTGCTTGC GGACCTAACT ATTCTCCTTC CAAGTTCCAG
TTCCAGTTTA ATAAGGATAC CAAAGAGATT GGCTATGGTG GCAAATACGA CTGGTGCTAC
AACCCAGAAG GTAAGCATGG CACCGGGAAA TTCCAGCAGA TTCCTGTGAA GTTAAAGGAT
TCTTCT
 
Protein sequence
SSCPIDIPFT CTNSTPIENS CCFESPGGVF VATQFWDYYP AIGDNDSWTL HGLWPDNCDG 
SWEEFCDDSL NVDSRIKPIL VDQFKDPELY EKMARSWKNF NGDDESLWTH EFNKHGTCVR
TIRPKCYYNF KQHQNIYDYY KIAVSTYEKL PTYDFFAQEG IVPSDTETYS KKQIDDALTK
HFGYPVYFKC NKFNALQEVW YFHHLKGSIK GEEFSRISRL NEPRCPESGI KLYPKGWKPP
TVPHPPNPPT GGDRGFIKLP NHPGCLISNG HWYQYGTCAT YQLVKSTFGG INLKTSKGFC
GFDSLGQFAC GPNYSPSKFQ FQFNKDTKEI GYGGKYDWCY NPEGKHGTGK FQQIPVKLKD
SS