| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_42763 |
|---|
| Symbol | |
|---|
| ID | 4837357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | - |
|---|
| Start bp | 1033979 |
|---|
| End bp | 1035595 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640388672 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001382973 |
|---|
| Protein GI | 150864234 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.183309 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.227667 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | CTAAATGTCG CCCCACTCAA TACGCCGCTC AGAAACAGAT TGCAGACTGT TGGAGTTATC
TGGCACACTA TCAGCATTCC GTCTTTTGTA TGTCTCTTTC TCTTGTTTGT CTCACTAGGG
TGGATCCTGT GGTTGACAGT AGTGTTTCCC TACTTTGTAT GGTGGTACGG CTTTGATCTC
CACACACCGA CAAATGGTAA AGTAGTCTAT AGAGTCCGAG ATTGGATGCG CAACTTCATC
ATCTGGGAGT GGTTCGTTAA CTATTTCCCC ATTGTAGTAC ACAAGACTGT GGATCTAGAA
CCGACCTTTT CTGAAGTTGA AGTCGTAGAA GACGACGAGA CAGACGACGA AGAAGACTTG
ATATCCGAAG ATTCGCGTAC TCTTATAGAT AAGATCTTTA AAGGGTTAGG TCTTAGTAAA
AGATTGAATG ATACAGAATC TCATTCTCCT CCTCCACAAC ATGGAAAAGA AGCTTCTGAA
AGCTCCAGTT CTCTGCAATC ATCTACTTCC TTATCATCCT CGAAACTCAA AAATGTAAAA
TATAGACGGG TTTCGACTGG GCCACGGTAT ATCTTTGGCT ATCATCCTCA TGGAGTCATT
TCTATGGGTG TAATGGGTAC TTTTGCAACC AATGCTGTGA GAAATGAGCC TTATCAACCT
CCTTTGAAGA TCCTCAAACC CTTTTTCCAT GATCCTTCTC AAGGTGAACG AATCTTCGCT
GGAATCGGAA ATATATTTCC ATTGACACTC ACAACCCAGT TTACCTTGCC ATTCTATAGA
GACTATCTTT TGGGTTTGGG GCTCACCAGT GCCTCTGCAA AAAACATCAA GAGTCTCATC
AATAACGGGG ATAACTCCGT ATGCATAGTG GTAGGTGGAG CCCAGGAATC GCTTTTGAAT
AATATGGTCT CAGGTATCAA CAATGTTGGT AAAGGATACA AAGGAAATGA TTACGACGAG
GAACCAAAAG AACCAGTTGT GGACGAAAGA AATATCGGCG GCGATTCGAG CCAAAGCTCT
CAGCCTACCC CCAAAGAAAG TAAAAGGCAA ATAAAATTGG TTCTCCATAA AAGAAAAGGT
TTTGTAAAGC TAGCCATTGA ACTTGGAAAT GTATCTTTAG TACCAATCTT TGCCTTCGGA
GAGGCTGACA TCTACAAGTT GACAATTCCC GAGCCAGGTT CACTAGGCTA TGCATTCCAG
CAATGGATGA AAAAAACGTT TCTGTTCACC GTACCATTTT TCAGTGCTCG TGGTGTGTTT
ATCTACGATT TCGGTTTCTT ACCATTTAGA AACCCTATCA ACGTCTGCGT AGGAAGACCC
ATTCATATTC CACAAGGTGT TCTAGCCGAA TACAAGTTGA AACATCCAGA ACCGGAAGAG
CCTGCACCAC CGCCTCCTTT GCTGGGAGAC AAGAAGATTT CTCGTAAAGA TTCGTTGTCC
AATTTGTTCA AACTTGGAGG ACAACCAAAA CCTAAAAGAC CTCCAGTCAA AACCAAAATG
CCTCCAGAAC TATTGGACCA TTACCATAAA TTGTATGTCG ACGAGCTTAA ACGGGTGTAC
GAAGAAAACA AGTGCAAATA CGGCTATGAA GACGTCGAAC TCAATATTAT TGAATAA
|
|---|
| Protein sequence | LNVAPLNTPL RNRLQTVGVI WHTISIPSFV CLFLLFVSLG WISWLTVVFP YFVWWYGFDL
HTPTNGKVVY RVRDWMRNFI IWEWFVNYFP IVVHKTVDLE PTFSEVEVVE DDETDDEEDL
ISEDSRTLID KIFKGRVSTG PRYIFGYHPH GVISMGVMGT FATNAVRNEP YQPPLKILKP
FFHDPSQGER IFAGIGNIFP LTLTTQFTLP FYRDYLLGLG LTSASAKNIK SLINNGDNSV
CIVVGGAQES LLNNMVSESK RQIKLVLHKR KGFVKLAIEL GNVSLVPIFA FGEADIYKLT
IPEPGSLGYA FQQWMKKTFS FTVPFFSARG VFIYDFGFLP FRNPINVCVG RPIHIPQVKT
KMPPELLDHY HKLYVDELKR VYEENKCKYG YEDVELNIIE
|
|---|
| |