| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_42745 |
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| Symbol | VPS34 |
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| ID | 4837040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 2628887 |
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| End bp | 2631940 |
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| Gene Length | 3054 bp |
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| Protein Length | 1017 aa |
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| Translation table | 12 |
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| GC content | 37% |
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| IMG OID | 640388355 |
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| Product | 1-phosphatidylinositol 3-kinase |
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| Protein accession | XP_001382736 |
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| Protein GI | 150864052 |
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| COG category | [B] Chromatin structure and dynamics
[D] Cell cycle control, cell division, chromosome partitioning
[L] Replication, recombination and repair
[T] Signal transduction mechanisms
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5032] Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.192309 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAACT TGTCTCCACT CAATGACTCC CTTTCGCAGA CCAAGTCAAC AGCTTTTGGG
CTTTCAAAGG ATCTTGCAAT TCCCATAATA GTCAAAGTAT GCTATCTAGA GTCTACAAGA
GATATGAAAG ATAGCCTCGC CAGTCTTTCT GAAAAGTTCG AGGATCCAGC AGTATTCAAT
ACTTTATCAA GGATATATCG ATTTTCAGAT CTCTTTATCA AAATAAGCAT CTTTGATGGC
AAGAACAATA ACCTTGTCAC AATTCCAGTA CAGACCACGT ATAAGTCATT CAACAATAAG
CGAGTATGGA ACCAATACCT CAAGATGGCC ATCAACTTCA ATCAGGTTTC CATTGACTCC
TACCTCAAGA TAGAAGTGTA TGAAATCGTC AATACGAAAC CAAAGTTGTT TGGTGTAGGA
TATTTGTCGT TGTTCAACAG AAAGAGCTCC AGATTGAGGA AAGGCTCACA AAAGATTCCA
ATCTTTACAG ACCCGACTAC TGAGAATATA GAATACGAGA ATATCCCGGG CTTGACAGAC
CTCGAGAAGA ACTTGATAAA GTACGAAGAT GGTGAGTTTA ATAGATTGGG CTGGTTAGAT
AAGCTTGTAC TTCCTAACGT CAGTTCCTTA AATGAACCCA ATAAAGACCA TGACTACTAT
CTCTATTTGG AATTGCCCAA CTTTGAATTG CCAATTGTCT ATTCAGATGT CACTTATCAT
ATCAATACAA GTATCCCTAC TATTCACCAT GAACAAGCTC CTATTGTTGA CAACCTCAAC
TCAAACATTG TGATCAATTC CATCGATATC CCCATGTCCA AAGATCCCAA CATGCTCAAA
ATTTATGATC CGGACTTCCA AACAGATTCA AATGTCAATA ACCAAAATAA TATTAATGTA
CCGTTAGACC CCATCGAACT TAAGTATCAC AAGTTAGAAA GACATATTAA CAACAACACT
ATATTAGACA AAGAATTGAA ACCGTCTCCA CAATTGAGAG ATGAGTTGGT CAATATATTA
ATAAAACCGT CCAATATCGA ATTGAACAAA ACAGAAAGAA ACTTGATTTG GAAATTCAGA
TATTACTTCA GTAAGAACAA TTCAATCAAC GAAGCAAGTG GGAAGACAAC AACGACAAAA
TCATTCTTGC TTAAATTCAT AAAGTCCATT GATTGGGCAG ACGATTATGA AGTTGAACAT
GCATTCAATG AAATCATCCC TAATTATTGG TCTGTTGATA AGTTGCAAAT CGGTGATGCA
TTGGAACTTT TAGGTAGTTA CTTTAACCCT TACATATTGG GCAAATCGGT CCTAGCCTCA
TCATCTACTC CACCAACTTC CAACGATAGC CTGGACCGGA AACTGAAGAA TGAGCCTAGC
AAGTTTTACA AGATATTCAA GAACGTTACT TTCTTGAGGA AAATGGCTGT TGACAGATTG
AGATTGGCAA GCAGTGACGA ACTATTATTG TATTTATTGC AATTAGTACA AGCCTTGAAG
TATGAATCGT TGATCTACGA TAAGAAGACA CCATATATCC AAGACACAGA GCATTTTGAA
ATGGCTAACG AGTTGAATGA CGACAATGAC TTGTTGAAAT CACCGCTTGC AAAGTTTTTG
ATTGAGAAGT CTATAGAAAA TCCAAATTTG GGTAACTTTT TCTATTGGTA TGTCAAGGTT
GAAAATGAAG ATCAACTTAA TAGCCCTACG AACCCTCACT CAAACCCTAT ACGAATTTAT
GCTATTATAT TAAACAAGTA CATCGACAGT TTGAAGAAAT ATTCACAGGC AAAGAAGCTC
CCAAATTATA AGAACTTGAA GATGCAGATC TGGTTTATCA AGAAATTGAC TAGTCTAGTT
GAATTGATCC GTACAACATT CCGCAAGAAT GAAGCGACTT CGAAAAAAAT TGAATTTCTA
AGAGAGTATC TTGCTAATCC TTCAAATGAA CTATTGAAAT TCCCAGAACC ATTCCCATTA
CCTCTTGACC CATCAGTGAA GATCTGTGGA TGCTACCCAG ATGAATCATC TGTGTTTAAA
TCCAGCTTAT CACCATTAAA AATCACATTC AAAACCATTC AAAAGACACA TGCCACCTCA
CAGTTGTTTG GAAAGAAGAA AAATCATAAG TATGACAAAT ATCCGCTCAT GTTCAAGATT
GGTGATGATC TTAGACAGGA TCAATTGGTG ATTCAGATTA TTAATCTTAT GAACCAATTG
TTAAAGAATG AAAACTTAGA CTTGAGATTG ACTCCTTACA AAATTCTTGC CACAAGCCCA
GTTGCCGGCC TAATACAATT TGTACCAAAT GAGACTTTGG ATTCTATTCT CGCGAAGACA
TACCCTGTTC CAGAAACAAA TGACAATAGT TCTCCACCAC AGCCTTCAGC ATCCAATAAT
GGTATTTTGA ACTATCTTAG ACTCCACAGT CAAGAACAAC AACCAATAGA GCCAGAAGTA
ACTAGTGTCC TCAACTCGTC TGAACAACTG GAAGAACACC CCATACAACC ACAGCCTACA
GTTATACTGG ATTTGGCGGT GTCTCCAACA CTAATGGATA ACTATGTCAA ATCTTGCGCT
GGCTACTGTG TCATTACATA CTTACTAGGA GTTGGTGATA GACATCTTGA CAACTTGCTT
CTTTCACCAA ATGGTAAATT CTGGCATGCT GATTTTGGCT ATATCTTAGG AAGAGATCCA
AAAATTCTTC CTCCTCTTAT GAAATTGCCG ATTCAGGTGA TCGATGGGAT GGGAGGGTTG
AATCATGAGA ACTTCAATAT TTTCAAGAGT TACTGTTTCA TAACCTACAC TACATTACGA
AAGAATAGTA ATTTGATTCT CAACTTGTTT CAATTAATGT TGGATGCTAA TATACCAGAT
ATCATGATCG ACCCCCAGAG GGCTGTTGAA AAAGTTCAGG AGAAATTCTG TCTAGAAATG
AGTGAAGAAG AGGCCATTTT GCATTTCCAG AACCTTATCA ACGGTAGTGT CAATGCCTTC
TTTCCTGTTG TTATTGATAG GTTACATAGT TTGGCACAGT ACTGGAGAGC ATGA
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| Protein sequence | MTNLSPLNDS LSQTKSTAFG LSKDLAIPII VKVCYLESTR DMKDSLASLS EKFEDPAVFN
TLSRIYRFSD LFIKISIFDG KNNNLVTIPV QTTYKSFNNK RVWNQYLKMA INFNQVSIDS
YLKIEVYEIV NTKPKLFGVG YLSLFNRKSS RLRKGSQKIP IFTDPTTENI EYENIPGLTD
LEKNLIKYED GEFNRLGWLD KLVLPNVSSL NEPNKDHDYY LYLELPNFEL PIVYSDVTYH
INTSIPTIHH EQAPIVDNLN SNIVINSIDI PMSKDPNMLK IYDPDFQTDS NVNNQNNINV
PLDPIELKYH KLERHINNNT ILDKELKPSP QLRDELVNIL IKPSNIELNK TERNLIWKFR
YYFSKNNSIN EASGKTTTTK SFLLKFIKSI DWADDYEVEH AFNEIIPNYW SVDKLQIGDA
LELLGSYFNP YILGKSVLAS SSTPPTSNDS SDRKSKNEPS KFYKIFKNVT FLRKMAVDRL
RLASSDELLL YLLQLVQALK YESLIYDKKT PYIQDTEHFE MANELNDDND LLKSPLAKFL
IEKSIENPNL GNFFYWYVKV ENEDQLNSPT NPHSNPIRIY AIILNKYIDS LKKYSQAKKL
PNYKNLKMQI WFIKKLTSLV ELIRTTFRKN EATSKKIEFL REYLANPSNE LLKFPEPFPL
PLDPSVKICG CYPDESSVFK SSLSPLKITF KTIQKTHATS QLFGKKKNHK YDKYPLMFKI
GDDLRQDQLV IQIINLMNQL LKNENLDLRL TPYKILATSP VAGLIQFVPN ETLDSILAKT
YPVPETNDNS SPPQPSASNN GILNYLRLHS QEQQPIEPEV TSVLNSSEQS EEHPIQPQPT
VISDLAVSPT LMDNYVKSCA GYCVITYLLG VGDRHLDNLL LSPNGKFWHA DFGYILGRDP
KILPPLMKLP IQVIDGMGGL NHENFNIFKS YCFITYTTLR KNSNLILNLF QLMLDANIPD
IMIDPQRAVE KVQEKFCLEM SEEEAILHFQ NLINGSVNAF FPVVIDRLHS LAQYWRA
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