Gene PICST_42490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_42490 
Symbol 
ID4836726 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp47102 
End bp48952 
Gene Length1851 bp 
Protein Length616 aa 
Translation table12 
GC content43% 
IMG OID640388041 
Productpredicted protein 
Protein accessionXP_001382771 
Protein GI150864077 
COG category[B] Chromatin structure and dynamics
[K] Transcription 
COG ID[COG5076] Transcription factor involved in chromatin remodeling, contains bromodomain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.814262 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTCCTC CTAAGAGAAA AGCTTCTGGA GCATTTTCTG GCGCAACAGG CACTCCCAAG 
AAACACAAAC CAAGCGAATC TCCCACACCC GAAGAACTCA AACAGTTCTA CGAATCAACA
TTAAAGCTTG TTTTTGATCT CAGAGACGAG TCAACTGATG AGCAGGTGGC TTTCCCGTTT
GTGAAAGTAC CCTCCAAGAA GCTCTACCCA GATTACTATG AGATTATCAG TCATCCCATC
GCATTACATG ATATTCTGAA AAAGATCAAC AAAGGAAAAT ACTCGGAATA CGCGACAATT
GATGAGTATG TAGATGACTT TCAACTTTTG CTTGACAATG CTGCCAAATA CAATGATCCA
GAATCTTGGA TCGTCACTGG AGCTCAGCAG ATCTACGATT TTGTAGTTAA GCAGAAGACT
GTCTTCTTGG ACCGTATAGC GAGCGAACAT GCCTCAGCGG CCGCAAAGTC TTCCGAAACA
CATCACAAGC TCAAGTTGAA GCTCAAGGAG CCAGCTGAAG ATAAGTCTGG TGTGACTTTT
GCCAGGTTGC CCCAGATTTG TTCCGAACTT CTTCAGGATG TCATAACCCA TGACTTTCCT
GATGAAGGCA TTATCTCCAG CCCCTTTATG GAAGAGGTAG ACTTGGATGA GTATCCTGAC
TATATTAACT ATGTAGAAAA GCCAATGGCG TTCAACACGG TGGTGACACA ACTCGGCAGA
AAGAAGATGT TCTCTCCTAA GAATTCCGTT TTGGAGAACA TACAGAAGTT CAGTGACATG
ACCACCCTCA TCTTCGCAAA TGCACAAGCA TACAATGATC CCAGTTCTGA GATTTACCAG
GATTCTGTAA AGCTCCAGAA CCTATTTAAT GAGAAGATCG ACGTATTGAA GTCTCAGATC
GAAGATCTGA AGTCAGCCAA GTTGAAGTTG AAGTTATCCA AACCAAAACT CAAGCTCAGT
CTTGGTGCAC CAGAAGAACC ACACGTACCA AAGAAGCGCG GTAGAAAGAA GAAGGTGGTA
GTCCAAGAAG AGATCAAGCA AGAAGAAGAA CAAGATGTAG ACACAAGAGA TTCGCTTGTA
GATGACAACG ATGATTCAAG AGATCTGATT GATGACCAAG AATTCAAGTC AGGAGTTTTG
GCGGCTGAGA AGTTCACTCC AAATACATTG GGAAAGTCTG CTCCAACGAT TCCAGTCACG
GATACTGCTA TCCAGGAAAC ATCCATAAGC TCTTCCATAA CTGTTGTCAG CCAGACCAGT
CAATATGCGT ATCAAAAGGT CCAACAGACT AATATTCCGC TTCAAAGACA TCAAGACTTG
AAGAAGGCAT TGTTCCCAAC TCACCATGTA GTACCATTAA CTTCGCTATT TGACTACCGT
GTCCCTTCCA ACGGTTTTAG TACCCAAGCA TATACCATCA CTTTGCCTCC TGAAGTTCTG
CCACTCGTGA CCTTCAAGGC TACGTTGCAC AGCATACTCT ATGAAATCAA GAGTGGAGAC
ATGATAGATG GACATACATA CTTGAACCTG GGCTCAGAAG AAGACTTCCA ATGCAAGCTC
TTTGTTAATG ATGAAGAAGT CTCCACAGCT GGTGACTGTT TTGAGGAAAA GGGGCCGGAT
GACACTGATC TTCTTGCCGT TCTGTTCGAT TTGAAATTAA ATTACGGATT GAATTGCTTG
AGTTTCGAAT GCAAGGTTGC CCCTTCTTTG AGCAAAAGAA TGAGAAGCTC ATTAAAGCAG
GATGAAGGAG AAGAGACCTC CGGCAGACAC ACCAGACACC AATTGCAGCA GCTCAAAATG
ACATGGGATG TAGAAACAAT CAATTTCTAT GTCATTTGCA ATTCTTCCTG A
 
Protein sequence
MVPPKRKASG AFSGATGTPK KHKPSESPTP EELKQFYEST LKLVFDLRDE STDEQVAFPF 
VKVPSKKLYP DYYEIISHPI ALHDISKKIN KGKYSEYATI DEYVDDFQLL LDNAAKYNDP
ESWIVTGAQQ IYDFVVKQKT VFLDRIASEH ASAAAKSSET HHKLKLKLKE PAEDKSGVTF
ARLPQICSEL LQDVITHDFP DEGIISSPFM EEVDLDEYPD YINYVEKPMA FNTVVTQLGR
KKMFSPKNSV LENIQKFSDM TTLIFANAQA YNDPSSEIYQ DSVKLQNLFN EKIDVLKSQI
EDSKSAKLKL KLSKPKLKLS LGAPEEPHVP KKRGRKKKVV VQEEIKQEEE QDVDTRDSLV
DDNDDSRDSI DDQEFKSGVL AAEKFTPNTL GKSAPTIPVT DTAIQETSIS SSITVVSQTS
QYAYQKVQQT NIPLQRHQDL KKALFPTHHV VPLTSLFDYR VPSNGFSTQA YTITLPPEVS
PLVTFKATLH SILYEIKSGD MIDGHTYLNS GSEEDFQCKL FVNDEEVSTA GDCFEEKGPD
DTDLLAVSFD LKLNYGLNCL SFECKVAPSL SKRMRSSLKQ DEGEETSGRH TRHQLQQLKM
TWDVETINFY VICNSS