Gene PICST_42242 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_42242 
Symbol 
ID4837160 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp785883 
End bp786533 
Gene Length651 bp 
Protein Length181 aa 
Translation table12 
GC content43% 
IMG OID640388475 
Productpredicted protein 
Protein accessionXP_001382388 
Protein GI150863791 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.129287 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.322783 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTGGA CTGACATTAT ACTCCAACAG CTCAATATCA GGGACGAAGT TCAGGACAAG 
GAGTCGCCTT ATTTCCATGC TTTCACAGTA CTAAGCAACC AGCTTCAGTC TCAGAAGTTA
CTCACTGAAC AATTCACAAC TAACCAAACG AGTTCGTCAC CGTCTCCTTC GCCGTCTTTG
ATCACAGATT CATCCTCCAA GATCGACAGA AGTAATCATA CAAGTCAGTC GGAGATTGGA
GCGTCGGAGT TACTCCATTG GTCTGTGATA TCCCGTGAGA ATCATAGACT CAAACAGGAA
AACACCGATC TAATAGCTTC GCTCAACCAA TCGGCCATTA ACCTTGAAAA AGCGGAAATG
GCCCTTTCCT CAGAGATAAA GACAAAGAAA TCACTAGAAA AAATGCTAGC AAGACTGAAT
ACCAAGATCG ACAATTTGGG CCATGAGCTC AAGGAAAAGG ATAAAGCCAT AGAAATCATC
AACGACGAAA TTCTTCTCCA CCAAATCCAG ACCAATGTGC TAAACGATAA GGTGGCAGAG
TTATCGCGAC AAAACGAAGT CCTTGTCCAA AGACTAATGA CACGAGCTCA GGTAGAAGCC
GAAAAGCTCA ACGATGCTAA TGAAAAAGTT CTGAAAAAGC CGCCTAATTG A
 
Protein sequence
MSWTDIILQQ LNIRDEVQDK ESPYFHAFTV LSNQLHNHTS QSEIGASELL HWSVISRENH 
RLKQENTDLI ASLNQSAINL EKAEMALSSE IKTKKSLEKM LARSNTKIDN LGHELKEKDK
AIEIINDEIL LHQIQTNVLN DKVAELSRQN EVLVQRLMTR AQVEAEKLND ANEKVSKKPP
N