| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_41766 |
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| Symbol | CDR4.1 |
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| ID | 4836871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 12766 |
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| End bp | 17103 |
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| Gene Length | 4338 bp |
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| Protein Length | 1445 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640388186 |
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| Product | ABC transporter |
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| Protein accession | XP_001382761 |
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| Protein GI | 150864070 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
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| TIGRFAM ID | [TIGR00956] Pleiotropic Drug Resistance (PDR) Family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0215088 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTCAACCAAA ATGTAGACAA TGAAATCCGG GAAGTTGCTA GAAATGTAAG TAGAGAATCG
AGTGATAATG AAGGTCTGCA TTCGACTCGT TCAACCTTGG TTTCAAATAC TTCCCAAATA
CCGGGACAAG TCCCCATGAC TAAAGATTTG TCTGACTGCA TTGATCCTAG GATTGATCCA
TACTCTGATC AATTCGACTC TAAGATCTGG GTACAAAATT TCAGAAAGGT TGTGCTTTCG
GATCCAGATT ATTATAAACC AGCATCCTTA GGAGTTGCCT ATAAGGATCT TAGAGCATAT
GGACTTGGTG TCGATTCTGA TTACCAGACT ACATTTGGCA ACGGAATATA TAAAGTAATC
AGCAGGTTTG CAAGAAAAAT ATCCGGTAGA GAGTCATTTT ACGATATTCT TAAGCCTATG
GATGGAATTC TTCTACCTGG TGAATTGACT GTTGTACTTG GTAGACCAGG CGCCGGATGT
ACGACACTAT TGAAAACACT TGCAGCACAA ACATATGGTT TCCATGTTGA TAAGGAAAGT
ATAATTCTGT ACGACGGTTT CACCCCATCG GATATTAAGA CACACTATCG TGGTGATGTT
GTTTATTGTT CAGAAACTGA AAAACACTTT CCACACTTGA CAGTTTGGGA TACTCTATAC
TTGGCTTCTA AGTTGAGGAC CCCACAAAAC AGGCCCTTAG GAATCCCAAG AACTGTGTAT
GCTAGGCATA TGACTGAAGT TGTATTGGCT ACCTATGGTT TGACTAATAC CAGGCACACA
AAAGTCGGCA ATGATTTTGT GAGAGGTGTT TCTGGAGGTG AAAGAAAACG AGTGTCAATA
GCTGAAGTTG CTTTGAATCA GGCATCGATT CAATGTTGGG ATAATTCTAC TAGAGGTTTA
GATGCGGCAA CTGCATTGGA ATTTGTTAGG GCTTTAAGGG TTTCAGCTCA ATACTCTAGG
GCCACTCCTC TAGTTGCAAT TTATCAATGC TCTCAGGATG GTTATGACAT ATTTGATAAG
GTGATATTGA TGTACGAAGG CTATCAAATC TTCTTCGGTA GCGCCAAAAA GGCAAAACAG
TATTTCATTG ACATGGGTTA TGAGTGTCCC CAAAGGCAAA CTACGGCTGA CTTCTTGACT
TCTTTAACTA ATCCTGCTGA GAGGATTCCA AGGAAAGGCT ATGAGGCGCA AGTTCCACGT
ACGCCTAAAG AATTCTATAA TTATTGGCAG AAGTCACCTC AAAGACAAGA ATTATTATCT
CAAATTGATA GCTACTTGAA TGAGCATAAT GAGTCTGATT CCAAGAGTGA GTTTCATGAG
TCTCATGTCG CGAAGCAAGC AAGGCACACT AATCCTGGAT CATCGTATAC TGTGTCATTC
ATGATGCAAG TTAAGTATGT TATCCAGAGA AATATTTTAA GACACAAGGG AGATCCATCT
TTCATGCTTT TCCAGGTTTT GGGCAACATA TACATGGCAT TTATCATTTG CTCCATCTTT
TACAATCTTC TGCCCACGAC AGACTCCTTC TACAGTAGAG GTGCAGCTTT ATTTTTCGCT
GTCTTGTTCA ATGCATGTGC ATCAGTGTTG GAAGTATTTT CGCTTTATGA GGCTAGACCC
ATTGTTGAAA AGCATAAGAC ATATGCATTG TACCATCCTT CGGCTGACGC TATCGGTTCA
ATAATAACAG AACTTCCTTC TAAGATCGTT ACCTGTATTG GATTTAATTT GGTCTACTAT
TTCATGATTA ACTTCAGGCG GGATGCTGGT CATTTCTTTT TCTATTTGCT CGTAAACTTC
ACTGCTACCA TTTCCATGTC TCACATATTT AGAACAATTG GTGCTGCGAC CAAGACGATG
TCCCAGGCTA TGACACCTGC AGAAATATTA TTGCTTGCAT TTGTAATCTT CGCAGGATTT
ATCATTCCGA CGCCAAATAT GCATAAATGG TGCAGATGGA TAAATTATAT TAATCCGATC
GCATATGCAT TTGAGGCTCT AGTTGCAAAT GAATTTACTG ATAGACATTT CGAATGTTCA
AAATTTGTAC CTTCTGGAGG CGACTACCCT GATGAGGGAC CAAACCGGAT TTGCAGCGTC
GTTGGATCTG TCGTTGGTGA AACCTTTGTT AATGGTGATG CGTATATAAA TGAATCTTTC
AAGTATTACT CTTCGCATAG ATGGAGAAAT TGGGTAATTG TTGTTGGCTT CCTGATTTTC
TTTATGTTTG TTTATATTCT CATGTGTGAG TTTAATAGGG GATCGAGACA GAAAGGTGAA
GTTCTTCTCT TCCAGAAGAT GTTTCCTAAA AAACAGGTTG ATATGGAAAT GGGAAAAATG
GAAAAATTTA CACCAGAATT CACTGGCAAT TCAAGTCTTG AAAGTAAACC AAAGCAAACA
TATACTGGGG GTATTTTCCA TTGGAGACAT TTATCATACA GTGTGAAAAT CAAATCTGAA
AATAGAGTAA TCTTGGATGA CATCGATGGT TGGGTCAAGC CAGGTGAGAT TACTGCCTTG
ATGGGAGCGA CAGGTGCTGG AAAGACTACA TTATTGAATG CCCTCTCGGA TAGGTTGACT
GTTGGTGTTG TCACCGACGG CGTTAGAATG GTAAACGGAA GACAATTGGA TGCTTCTTTC
CAAAGATCAG TTGGGTATGT TCAACAACAG GATTTACATT TGCAGACATC CACCGTCCAG
GAAGCTCTAA AACTATCTGC ATATTTGAGG CAACCTTATG CAGTATCGAA AAAGGAGAAG
GATGACTATG TAAACTACGT GATTAAATTA TTGGATATGG AACTGTATTC TGAAGCTGTT
GTGGGCGTGT CTGGAGAAGG TCTTAATGTC GAGCAAAGAA AAAGGCTCTC AATTGGCGTT
GAATTAGTAG CAAAGCCAAA GTTGTTACTT TTCTTAGACG AGCCTACATC TGGATTGGAT
TCACAAACGG CCTGGTCCAT TTGCAAATTG ATTAGAAAAT TAGCTGACAA TGGCCAGGCA
ATTATATGCA CCATTCATCA ACCTTCGGCC ATTCTATTGA AGGAATTTGA TCGACTTCTT
TTCTTGCAGA AAGGAGGCCA AACCGTATAC TTTGGTGAAT TGGGAGATTT CTTTCAAACT
TTGATTGATT ATTTTGAAAA GAAAGGTGCT CATAAATGCC CTGCGGATGC TAATCCAGCT
GAGTGGATGT TGGAGGTAAT TGGTGCGGCT CCAGGTTCTC ATTCGAAGGA AGATTATTCA
AAGGTGTGGA AGAATTCTGA AGAGTATAAG AAGGTCCAAA GAGAATTAGA TGCTATGGAA
AAAGAGCTCG TTGAACTACC AGTTGATGAT GACCCAGAGA AGTTCCAGAC ATTTACAAAT
CCGTTGTGGA AACAGTATTT ATTAGTTACC AAAAGAGTCC TCGAGCAGTA TTGGAGAACA
CCAAGTTATA CTTATAACAA GGTGTCATTG GCTATCCTTG CTGCTTTGTT CAATGGGTTT
TCATTTTTCA AGGCAGACAA ATCTCGTCAG GGCCTTCAAA ATCAAATGTT TTCAGTTTTT
ATGTTTTTGG TCAATTTGAT GACTTTAGTA CAACAGTATT TGCCTCATTA TGTTGCGCAG
AGAGATCTAT ATGAAGTCAG AGAGAGACCT TCAAAAACAT TCAGTTGGTT TGCTTTCATT
ACTGCCCAAA TTAGTTCAGA GATACCTTGG AATATTTTAT GTGGCACATT AGCCTTTGTT
TGTTGGTATT ATCCTGTTGG TTTTTATCGT AATGCTGAAG AAACTAATAC TGTTAAGGAA
CGTGGAGCAT GCATGTGGTT TGCCATAGTC ATGTTCTACG TTTACACTTC GACATTAGGA
CAGCTATGTA TTTCTTTCTT GCAGTTGGCA GACAATGCGA CCAACTTAGT TGTCATCTTG
TTCAACATGT GCCTTGCGTT CTGCGGTGTA TTGGTAACCA AACAAAAGTT GCCGGGATTC
TGGATATTCA TGTACAGGGC GAACCCATTC ACATACTTGG TTTCAGTTAT TTTATCTACA
GGGTTGTATG ATACAAAAGT TACATGCTCC TCTAGAGAGA TTCTAGATAT TCCTGTTCCG
CAGGGATTAA CGTGTGAACA ATTTATGGGA CCTTACATGG AGGTCTCTGG TGGCTACTTG
CTTAGAGATG GTGGCGAATG CCGTTATTGT ACAATGGCTA ACACTAACGT ATTCCTCGAT
CTGATAAATG CTAATTATCA TACGAGATTT AGGGATATGG GGATTTTTAT CTCGTTTATT
GGCATTAATG TTGTAGGTAC AATTTGCTTC TACTGGCTTG CTAGGGTTCC AAAGTTCAAC
AAAAGGTCAA CTAAATAG
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| Protein sequence | FNQNVDNEIR EVARNVSRES SDNEGSHSTR STLVSNTSQI PGQVPMTKDL SDCIDPRIDP
YSDQFDSKIW VQNFRKVVLS DPDYYKPASL GVAYKDLRAY GLGVDSDYQT TFGNGIYKVI
SRFARKISGR ESFYDILKPM DGILLPGELT VVLGRPGAGC TTLLKTLAAQ TYGFHVDKES
IISYDGFTPS DIKTHYRGDV VYCSETEKHF PHLTVWDTLY LASKLRTPQN RPLGIPRTVY
ARHMTEVVLA TYGLTNTRHT KVGNDFVRGV SGGERKRVSI AEVALNQASI QCWDNSTRGL
DAATALEFVR ALRVSAQYSR ATPLVAIYQC SQDGYDIFDK VILMYEGYQI FFGSAKKAKQ
YFIDMGYECP QRQTTADFLT SLTNPAERIP RKGYEAQVPR TPKEFYNYWQ KSPQRQELLS
QIDSYLNEHN ESDSKSEFHE SHVAKQARHT NPGSSYTVSF MMQVKYVIQR NILRHKGDPS
FMLFQVLGNI YMAFIICSIF YNLSPTTDSF YSRGAALFFA VLFNACASVL EVFSLYEARP
IVEKHKTYAL YHPSADAIGS IITELPSKIV TCIGFNLVYY FMINFRRDAG HFFFYLLVNF
TATISMSHIF RTIGAATKTM SQAMTPAEIL LLAFVIFAGF IIPTPNMHKW CRWINYINPI
AYAFEALVAN EFTDRHFECS KFVPSGGDYP DEGPNRICSV VGSVVGETFV NGDAYINESF
KYYSSHRWRN WVIVVGFSIF FMFVYILMCE FNRGSRQKGE VLLFQKMFPK KQVDMEMGKM
EKFTPEFTGN SSLESKPKQT YTGGIFHWRH LSYSVKIKSE NRVILDDIDG WVKPGEITAL
MGATGAGKTT LLNALSDRLT VGVVTDGVRM VNGRQLDASF QRSVGYVQQQ DLHLQTSTVQ
EALKLSAYLR QPYAVSKKEK DDYVNYVIKL LDMESYSEAV VGVSGEGLNV EQRKRLSIGV
ELVAKPKLLL FLDEPTSGLD SQTAWSICKL IRKLADNGQA IICTIHQPSA ILLKEFDRLL
FLQKGGQTVY FGELGDFFQT LIDYFEKKGA HKCPADANPA EWMLEVIGAA PGSHSKEDYS
KVWKNSEEYK KVQRELDAME KELVELPVDD DPEKFQTFTN PLWKQYLLVT KRVLEQYWRT
PSYTYNKVSL AILAALFNGF SFFKADKSRQ GLQNQMFSVF MFLVNLMTLV QQYLPHYVAQ
RDLYEVRERP SKTFSWFAFI TAQISSEIPW NILCGTLAFV CWYYPVGFYR NAEETNTVKE
RGACMWFAIV MFYVYTSTLG QLCISFLQLA DNATNLVVIL FNMCLAFCGV LVTKQKLPGF
WIFMYRANPF TYLVSVILST GLYDTKVTCS SREILDIPVP QGLTCEQFMG PYMEVSGGYL
LRDGGECRYC TMANTNVFLD SINANYHTRF RDMGIFISFI GINVVGTICF YWLARVPKFN
KRSTK
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