| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_41330 |
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| Symbol | TPS1 |
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| ID | 4837586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 1448341 |
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| End bp | 1449759 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 12 |
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| GC content | 46% |
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| IMG OID | 640388901 |
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| Product | Trehalose-6-phosphate synthase |
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| Protein accession | XP_001382500 |
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| Protein GI | 126131950 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0380] Trehalose-6-phosphate synthase |
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| TIGRFAM ID | [TIGR02400] alpha,alpha-trehalose-phosphate synthase [UDP-forming] |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.336184 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.497082 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAGTCG GCAAGGTCCT TGTAGTCTCC AACCGACTTC CAGTAACCAT CAAGCGTTCT
GACTCCGGCT CCTACGACTA CTCGATGTCT TCCGGGGGTC TAGTCACCGC ACTTCAAGGG
TTGAAGAAGT CAACAGAATT TCAGTGGCTA GGCTGGCCTG GTTTGGAAGT ACCTGCGGAC
GAACAGGAGA GAGTCAATTC CGACTTGAAG TCGAAGTTTA ACTGTACAGC CATCTATTTA
AGTGACGTTA TAGCTGATTT GCACTATAAT GGCTTCTCCA ATTCAATCCT TTGGCCGCTT
TTCCATTACC ATCCGGGTGA AATGAACTTT GACGAAAACG CCTGGGCTGC TTATATCGAA
GCCAACCGCC AGTTTGCCGT AGAAATAGCA GGCCAGGTCA ATGACAACGA TATGGTATGG
GTGCACGATT ACCACTTGAT GCTCTTGCCT CAGATGTTGC GGGAAGAAAT CGGCAACAGA
AAGAAGAATA TCCGTATCGG TTTCTTCTTA CACACGCCGT TTCCATCGTC AGAAATATAT
AGAATTTTGC CCGTAAGAAA AGAGATCTTG GAAGGTGTTT TGAGCTGTGA CTTGATCGGC
TTCCACACCT ATGACTATGC CAGACACTTC TTGTCTTCAG TATCGCGTAT TGTAGCCGAC
GTGACTACTT TACCCAATGG AATTGAGTTC CAGGGAAGAT CTATCAGTAT TGGGGCTTTT
CCCATCGGTA TCGACGTCGA CAAGTTCACT GAGGGCTTGA CCAAACAGTC GGTTATCGAC
AGAATCAAGC AGTTGAAGTC CCGCTTTGGT GACACCAAGA TTATCGTGGG GGTAGATCGC
TTGGATTACA TCAAGGGTGT CCCCCAGAAA CTCCACGCAT TCGAGGTTTT TTTGGAAGAA
AACCCAGAAT GGATCGGCAA AGTAGTCTTG GTCCAAGTTG CAGTGCCTTC TAGAGGCGAC
GTAGAGGAGT ACCAATCACT CAGAGCTACT GTTAACGAGT TGGTAGGTAG GATAAATGGG
AAGTTTGGAA CCGTGGAATT TGTACCTATC CATTATATGC ATAAGTCCGT GCCCTTTGAC
GAGTTGATAA GCTTGTACCG TGTGTCTGAT GTCTGTCTTG TCAGTTCTAC AAGAGACGGA
ATGAACTTGG TTTCTTACGA ATACATCGCT TGTCAGCAGG AAAACAACGG GGTATTGATA
TTGTCTGAGT TCGCTGGTGC TGCGCAATCG TTGAATGGAG CTATCATTGT CAATCCATGG
AATACAGAAG ACTTGAGCAT TTCTATCAAG GAAAGCTTGA CGTTACCAGA AGAAAAGAAA
GCTATCAACT TCAACAAGCT CTTCACTTAT ATCTCCAAGT ATACTTCCGG CTTCTGGGGT
GAAAGCTTCG TCAAAGAATT GTACAAATGC ACATCTTGA
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| Protein sequence | MVVGKVLVVS NRLPVTIKRS DSGSYDYSMS SGGLVTALQG LKKSTEFQWL GWPGLEVPAD
EQERVNSDLK SKFNCTAIYL SDVIADLHYN GFSNSILWPL FHYHPGEMNF DENAWAAYIE
ANRQFAVEIA GQVNDNDMVW VHDYHLMLLP QMLREEIGNR KKNIRIGFFL HTPFPSSEIY
RILPVRKEIL EGVLSCDLIG FHTYDYARHF LSSVSRIVAD VTTLPNGIEF QGRSISIGAF
PIGIDVDKFT EGLTKQSVID RIKQLKSRFG DTKIIVGVDR LDYIKGVPQK LHAFEVFLEE
NPEWIGKVVL VQVAVPSRGD VEEYQSLRAT VNELVGRING KFGTVEFVPI HYMHKSVPFD
ELISLYRVSD VCLVSSTRDG MNLVSYEYIA CQQENNGVLI LSEFAGAAQS LNGAIIVNPW
NTEDLSISIK ESLTLPEEKK AINFNKLFTY ISKYTSGFWG ESFVKELYKC TS
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