| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_35133 |
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| Symbol | HOL42 |
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| ID | 4837673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 1730476 |
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| End bp | 1731945 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640388988 |
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| Product | major facilitator superfamily multidrug-resistance protein |
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| Protein accession | XP_001383098 |
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| Protein GI | 150864328 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.446888 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.227667 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTTTAT CCAGCGATAT TGAAAAGCAC TTCGAAAGCC ACATTGAAAG CGTTCTGGCT
GAAAACTTGC CAGAACTTTC TCGTGAACAT ATTGAATATC TTATGGAAAG ACATGGAACA
ATTGAGTTAG ACCCACTTCC TTCCATGGAC CCAGAAGATC CACTCAACTG GCCAAATTGG
AGAAAAAACT ATGAAATTTT GATTATTGCT TACCAATGCT TTATGGGTAC CTATTTTGCT
GCTGGTCTTA CTCCAGCTTA TGAAGGTATG GCTGAAGAAT ACGGTATTGA TATTCCAACT
GCTTCATACT TAACTTCTTC TCAAATTGCT ATAATGGGTG TTTTGCCTCT TTTTTGGGTT
CCTATTATGA ATACTTTTGG TAGAAGGTCT ATTCTTTTGT ACTCTGCTAT TTGTGCCATA
GGTTTAAATA TTGCTGGAGC TTACGTTACC ACATATGGAC AACAAATGGC TACTAGATGC
TTGTATGCTT TCTTCAATGC CACCGCTTCC GCTTTGGGTA GTGCAGTGGT TTCTGATTTG
TCTTTCAGTC ACGAAAGAGG TAAGAAGAAT GGTTGGTGGT CTCTTGGTTT TGTTGTTGGC
ACACCAGCTG GTCCATTCCT TTCTGGTTTC ATTATGCAAT ACTCGACAAA AAAATGGATT
TTCTTCATGT TCGCTATCAT GAACGCCATT CAGGTTGTGT TGTTCTTCTT TTCTAAAGAA
ACCGTATACA ACAGAGGCGA CAAAATTGAA GAGCCATCCA AGCTTATCAA AATGATTGGT
ATTTTCAGAC GTAATTCCAA GAAGATAAAT GTTGGTGCTT TTGTGAAACC ATTCAAGCAA
GCTGCAAATT GGAGAATTAC TGTTGTCATC CTTGCTGCTA GTGTCACTTT CGCTTATGCT
AACATCGTTC TCATTGTCGA GATGCCACAA ACCTTTGGTG CAATTTTCGA ACTCAGTCCT
CAAGCATTAG GTTTGCACTA TATCGCTCTT ATTGTCGGTT CTTGTATTGG TGAGGGACTT
GCCGGTCCCC TTTCCGATTG GTGGATGGCC AGAAGTATCA AAAAGAGAAA TGGCCAAAGA
GTCATCGCTG ATAGATTGTT TATTTCCTAC AATGGGTATT TGCTAGTCAT TGTTGGTTTA
GTTGTTTGGG GTGTTTATTT GGACAGGGCT CAACCTGGTC ATTGGAAAAT TAATGCTTTG
ATTGGTTCAG CAATTATAGC AGCTGGTAAC AATATCGTTG CCACTGTTTT GATTACTTTC
GCCATTGACT GCAACCCAGC ATGCGCTGCC GATATTGGTT TATATATGAC TTTTGTCAGA
CAGGTCTATG GTTTTATCGC CCCATTCTAC TTCCCATACA TGTTTACCAA CTTAGGTTTC
ATGGGTTCTG CAGGTTTGAT GATTGGACTT GTTTTCGTTT TTGGTTCACT TTCCACTGCA
TTGGTACACA TTTTGAGTAG AAACAAATAA
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| Protein sequence | MSLSSDIEKH FESHIESVSA ENLPELSREH IEYLMERHGT IELDPLPSMD PEDPLNWPNW
RKNYEILIIA YQCFMGTYFA AGLTPAYEGM AEEYGIDIPT ASYLTSSQIA IMGVLPLFWV
PIMNTFGRRS ILLYSAICAI GLNIAGAYVT TYGQQMATRC LYAFFNATAS ALGSAVVSDL
SFSHERGKKN GWWSLGFVVG TPAGPFLSGF IMQYSTKKWI FFMFAIMNAI QVVLFFFSKE
TVYNRGDKIE EPSKLIKMIG IFRRNSKKIN VGAFVKPFKQ AANWRITVVI LAASVTFAYA
NIVLIVEMPQ TFGAIFELSP QALGLHYIAL IVGSCIGEGL AGPLSDWWMA RSIKKRNGQR
VIADRLFISY NGYLLVIVGL VVWGVYLDRA QPGHWKINAL IGSAIIAAGN NIVATVLITF
AIDCNPACAA DIGLYMTFVR QVYGFIAPFY FPYMFTNLGF MGSAGLMIGL VFVFGSLSTA
LVHILSRNK
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