Gene PICST_30179 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_30179 
Symbol 
ID4836739 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp2157809 
End bp2159662 
Gene Length1854 bp 
Protein Length617 aa 
Translation table12 
GC content43% 
IMG OID640388054 
Producthypothetical protein 
Protein accessionXP_001382638 
Protein GI150863977 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0761319 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCTAG TCATATATTT TACCGCAATA GCTACACTTA TTACTGCTGC ACTTGCATAC 
GAGACTGCTC TGAAGTTCTT TCACGTGGTT GCAAGAGATG AGAATGGTCG CTTGGTACAA
ATCGGTTTTG AGGGCGAGTT AGTTGCTGGT TCTGAATCCG ACAATCCTAT TTATTTCTCC
TTAGATTCTA ATGGCATTCT TAAGTTCGAC GATTTTATTG TGGCAAGGAA GGGTGGTAGA
CTTATTGGAA CTAATAGGAA AGAGTTGCGC AATGCTGAAT GGGGTTTAGT TAATGGAAAC
CAACTCAGCT TCAATGGAAA GAGAACTTTC CACATCTGTA GCGATCAACA AAATATAGTC
AGCAAGAAGG GATATCTCAG CCTATCTTCT GGAGTAGGTT GCTCTTCTGT AGTTTTGGAG
GCAGTCTTTG GAAAGTCATA TCTTCAGGAC AACCGGTGGA AAAAGAGGGC AGAATCTGAT
ACACTTACAG AGACCTCTCC TCCATTTCCT GTCCCTAATC CATCAGATGA AGCACCAGTG
GAGACGCCAG TGGAGACACC TGTTGAACCA CCAGTTGAAA CACCAGTGGA GACACCTATC
GACACACCAG TTGAGACACC TGTTGAACCA CCTGTTGATA CACCTGTTGA TACACCAGTT
GAGACACCAG TTGAGACACC AATCGACACA CCGGTTGAGA CACCTGTTGA ACCACCAGTT
GAGACACCAG TTGAGACACC AGTTGAGACA CCAGTTGAGA CACCTATCGA TACACCTATC
GACACACCTA TCGACATACC TATTGAAACG CCCATTGAAA CGCCCATTGA TCCAGGCGAT
GAATGCACTC CCACTAGCAC AACCTACTTT TTCACAATGT TTACTGAAAT CATTACCTAC
TGCAATGCCT GTAATGAACC GGGCTGCGAA CTAGTGTGCG TAACAGAAAC ATTCATGCCA
TCCGGAGTGT GGTTATCCCT TCTTTATGAT AGTGACTGTA CTATTGATAC TAGCGAGCCT
ACTGGTCCTA TTGATTCTAT TGACAATAGT TGTTCCATTG TTACTAAAAT CTTGACACCA
TCCGATATAG CTATCCCGAC AGGTTGCGAA CCAGTAGTAG AATGTGAAAC AACAGTTGAA
CTTGTAGGAT ATGAGTCTGT GGTTGAAGAT GGAAGTACAA TTTTTGGGGA CATTCCAAGT
ACTATTACAA AGTGTGTTAC TGCAGTTCCA GATTGCGTAA TTGAGAGCTT AATTACTATC
ACTACCCAAG TTTGTCTTCC AGAAATTCCA CTTCCCGAGG GATGTAGTAG TGTAACGATT
ACAACAACCT CAACTATAGA TGTACCTACA ATTTGTCCTA CTGAAAGTGA AATTTGCGAG
GAAACAACAT ATGTGACTAT CTTTTCTCCA AGTGGTGCAG TATTTATTAT GGAACCTCTT
CCAACCACCG TTACAACTAG TCTTTGTCAT TTCGCTTCAT GTCCTACACC AGGGGTATCT
ACTGTCACTT ATACTACAGT GGTTCAGGAA TGTGATGGCG AGATTGTAGA CCCTACCAAA
CCTAACAACC CTAATGATCC AAAGAACCCT AACGATCCAA AGAACCCTAA CGATCCAAAG
AACCCTAACG ATCCAAAGAA TCCTAATGAT CCAAAGAATC CTAATGATCC AAAGAACCCT
ACCAATCCAA AGACTCCAGA CCCCAAGAGC CCAAGCTCAA GTACGTCAGA TAAACCAAGG
GGCACTCCAG GAGTTGAAGA TGACGACAAC CAAGACGAAG GCACTGGTTC ATCTCTTCAT
TATTTCTCGG GAGCTGCAGT TTTAGTAGTT ACATCAATTC TTCTCTTTCT TTGA
 
Protein sequence
MKLVIYFTAI ATLITAALAY ETASKFFHVV ARDENGRLVQ IGFEGELVAG SESDNPIYFS 
LDSNGILKFD DFIVARKGGR LIGTNRKELR NAEWGLVNGN QLSFNGKRTF HICSDQQNIV
SKKGYLSLSS GVGCSSVVLE AVFGKSYLQD NRWKKRAESD TLTETSPPFP VPNPSDEAPV
ETPVETPVEP PVETPVETPI DTPVETPVEP PVDTPVDTPV ETPVETPIDT PVETPVEPPV
ETPVETPVET PVETPIDTPI DTPIDIPIET PIETPIDPGD ECTPTSTTYF FTMFTEIITY
CNACNEPGCE LVCVTETFMP SGVWLSLLYD SDCTIDTSEP TGPIDSIDNS CSIVTKILTP
SDIAIPTGCE PVVECETTVE LVGYESVVED GSTIFGDIPS TITKCVTAVP DCVIESLITI
TTQVCLPEIP LPEGCSSVTI TTTSTIDVPT ICPTESEICE ETTYVTIFSP SGAVFIMEPL
PTTVTTSLCH FASCPTPGVS TVTYTTVVQE CDGEIVDPTK PNNPNDPKNP NDPKNPNDPK
NPNDPKNPND PKNPNDPKNP TNPKTPDPKS PSSSTSDKPR GTPGVEDDDN QDEGTGSSLH
YFSGAAVLVV TSILLFL