| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_29646 |
|---|
| Symbol | |
|---|
| ID | 4837173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | - |
|---|
| Start bp | 766101 |
|---|
| End bp | 767994 |
|---|
| Gene Length | 1894 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640388488 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001382917 |
|---|
| Protein GI | 150864192 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0379511 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTAC CACAGCCTCC GTTCAAAGTC AAAACCAAGG TGTCTTGGGC TGGAGAAGAG
GATGGTGACT TGGGGTTTCT TGAAAACGAG ATTATTGAAG TGTACTCCAT CGTCGATGAA
TCATGGTGGT CGGGAAAGCT CAGACGAAAC AGAGCTGAAG GTATCTTCCC CAAGGACTAC
GTTGAGGTGA TTCCAGAGTT GAATAAATCA GTATCCAGTC ACTCCATTGG TACCCCCAAA
GCACAGACTC CCGTCCAGAC TCCCATCCAG ACTCCCGTCA AAGAAGCTGA CTATGGTAAG
TTCAAACATA GCAGAGCCAG CGGAACTCCT ACGGGAATGT ATAACTCTTA CAACGGTTCC
AAGTCAGTAT CTCCCAAGAG ATACCACCAT GTCAATGTTG ATGCTGACGG CTCATTTGAA
GTCGAAGATG CTGTCAATTG CACCTATGAT GGCATCTACG ATTCTTCTAA TGGCATGTCG
CTGTCAAACC GAAGCTCACC CAAGAAAATC AGATCTGCCA ACAAGCTCGT TTCATCTACC
CAACATCCTC GGTACCGAAA CAGCCATAAT GGGTACCAGC AGCAGCAACA CGAGGATTTT
GACAGAGAAC GCGAAATGGA AAACTTTCGT ACCCTCCAAC AGCAACAGAA CTACCACATC
AAGAAACTGC CTCTGCACAA TATGAAATCG CTGGTTCAAA CCCAACAGCA AGAATTCAGA
CAATCCTCAT ATTCACCGGA AAATAGTAAC TCCATCTATG GAAAACATCA AGGAAAGTCC
AATTCAAGAT CAGGCTCGCA ACAGAACTTG TCTCAATCTG CTGTCCAGGG ACATCCTCCG
CAAGTAAAGT CGCAATCGTA TGTTGATATA CCCTACAGAA ATCAACAGAA TAACACCGTA
GAAAGTTTTG TTTCCGAGGG ATCTCCCTCA CGTCAAGCTA GGAGGGCCAG ATACGACGCT
GATGCCGTGA ATGAATACGA GATCATCTCC CAGAAAAGGG CCCAATTGGA GTTGGAGTTA
CTGCAGTTGA AGCAGTTGGA AAGGTCTACC CAGAAGAAAA GAGTCCACAA CCCCCATCTT
CAACACAAGC TGGGCCAAGT CAGTCGTGGC AGCAATGATG ATTCCTTAGT GAACTCATTA
GAATCTAGCT ATATTAGCGA AGACCTCTTA TCTTCCAAGA AGAACTACTC TTCCAGAGAG
GATCTTGGAA AGAAGCTTGC TAAGTTCGAA AGTGTTGACG ACGAAGATGA TGACTATTTC
AACGATAACG AGTCGTCTCC ACCACCTCCT CCACCAAAAC ATACTACACC TATCAAGGCT
ATTGAAGCTA TCAGAGACAA CGATAGTCCA CTTAGAAAAA GTGGAAACAA AGTTCCTTTT
GATGCTGATG ACTTCAGGTT TTCTGGTTCA AATCGCCTCC ATCAGGGTCA AGTATCCGAA
GAAGATGTCT ACAGAGTGTC CCAGCTTCAG CAGGATGACT TGAAGAACTC GATCAAGTCG
TTGCAAAGTG ATGTCTTAAA TTTATCTGAA CTCAGTGCCA CAAGTGCTGG TTCTTTTATG
AGACACAAGT ACGAGAGAGA CATCCAACAA CAAGAAATGA AGTTACACAG CTTATCCATC
AATGAAGAAG AGGAAAAAAG ATCACCTAAG CAAAACGGGA AAGATGTTAT GGACTCCGTT
TTCCAGGAAA AGAAATCGAG GCATCCTAAT ATTTTCAAGA TGTTGTTGCT GAAGAAGAGC
GACAACGAGA TCAATGTTAT TGAAAGAAAG CTCCAAAAGG ACGAAGAAAT TGACTGGACC
ACTTTCAAAA TGGATCTTAA TCGTATGAAC TCGTTGACTT CTCATGACAA ACAAGCCAGA
ACCAGAAGAG TGGTCAGAGA AGAGGGCTCG TTGA
|
|---|
| Protein sequence | MSVPQPPFKV KTKVSWAGEE DGDLGFLENE IIEVYSIVDE SWWSGKLRRN RAEGIFPKDY
VEVIPELNKS VSSHSIGTPK AQTPVQTPIQ TPVKEADYGK FKHSRASGTP TGMYNSYNGS
KSVSPKRYHH VNVDADGSFE VEDAVNCTYD GIYDSSNGMS SSNRSSPKKI RSANKLVSST
QHPRYRNSHN GYQQQQHEDF DREREMENFR TLQQQQNYHI KKSPSHNMKS SVQTQQQEFR
QSSYSPENSN SIYGKHQGKS NSRSGSQQNL SQSAVQGHPP QVKSQSYVDI PYRNQQNNTV
ESFVSEGSPS RQARRARYDA DAVNEYEIIS QKRAQLELEL SQLKQLERST QKKRVHNPHL
QHKSGQVSRG SNDDSLVNSL ESSYISEDLL SSKKNYSSRE DLGKKLAKFE SVDDEDDDYF
NDNESSPPPP PPKHTTPIKA IEAIRDNDSP LRKSGNKVPF DADDFRFSGS NRLHQGQVSE
EDVYRVSQLQ QDDLKNSIKS LQSDVLNLSE LSATSAGSFM RHKYERDIQQ QEMKLHSLSI
NEEEEKRSPK QNGKDVMDSV FQEKKSRHPN IFKMLLSKKS DNEINVIERK LQKDEEIDWT
TFKMDLNQPE EWSEKRAR
|
|---|
| |