Gene PICST_29560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_29560 
Symbol 
ID4836703 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp564213 
End bp565094 
Gene Length882 bp 
Protein Length293 aa 
Translation table12 
GC content40% 
IMG OID640388018 
Productpredicted protein 
Protein accessionXP_001382345 
Protein GI150863763 
COG category[R] General function prediction only 
COG ID[COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.820311 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTATAT CCATTTCCGT TACATCAACT TCCGTCATCA AGGAAGCCCC CGTATCTGCT 
GACCATGTCA TCAAACTATT GCAGGACAAG TATGGAAAGG GCGAAGCAAT TGACGCTAAG
AAACTCTCAG AATACATTTT GGAGGATATT CAGCAGAGGT CCTCGAAACA CAAATTCATA
GTTCAGGCTA CAAAACTAGA GGCAGATGAT GGTGTAGATG CAGACTTGCT TATTGCGTCC
AGTTTTGGAG CTGTGTGGGA AGCTGAAAGA GACGGTTATA TCAGTCTTAA AATCGTCTCG
AATGAGGCAG AAGCTGAAGA GAAGTCTGAG AAGGTAGAAA AGATAGAAGA AAATAAACCA
GAGATAGCGG AAACTGAACA TGAAGAACTG AAAGTTGAAG GAGGAGAAGT AGATAAGGAA
GGTGAAGTAG ATAAGGAAGG TGAAGTAGAC AAGGAAGGTG AAGTAGACAA GGAAGGTGAA
GTAGACAAGG AAGGTGAAGT AGACAAGGAT GATAAAGGAG ATAAGGAAGA TGAAGATGTG
GAAGAAGATA AGGAAGCTGA GGTAGGAAAC GAAGATGTGA AGGAAACTGA AGAGAAAGAA
GAAGCAATTA AGGAAGAGAA AGAAGTGGAG CAAGAAATTA AAGAAGATAA AGAAGAGGAA
AGAGAGGAAG AAAACGAAGG AGACAAACAA GGAGAAAATG AAGTCAAAGA ATACAGGCAC
ATTGAAAATG AAGAGAATCA AGAAGTTCTA AAGCATACTG AAGAATTGGA ATCTGAAGGG
CCTATAAAGG AAGAAGTTTC TCTTACTCCT GATGAGAAAC AACAAGTCAA GACGCCATTG
AAAACTACGT TAGTATCATT ATTCTGGATA TATGTCAATT AG
 
Protein sequence
MSISISVTST SVIKEAPVSA DHVIKLLQDK YGKGEAIDAK KLSEYILEDI QQRSSKHKFI 
VQATKLEADD GVDADLLIAS SFGAVWEAER DGYISLKIVS NEAEAEEKSE KVEKIEENKP
EIAETEHEES KVEGGEVDKE GEVDKEGEVD KEGEVDKEGE VDKEGEVDKD DKGDKEDEDV
EEDKEAEVGN EDVKETEEKE EAIKEEKEVE QEIKEDKEEE REEENEGDKQ GENEVKEYRH
IENEENQEVL KHTEELESEG PIKEEVSLTP DEKQQVKTPL KTTLVSLFWI YVN