Gene PICST_21871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_21871 
Symbol 
ID4836950 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp2558048 
End bp2558587 
Gene Length540 bp 
Protein Length180 aa 
Translation table12 
GC content41% 
IMG OID640388265 
Productpredicted protein 
Protein accessionXP_001382725 
Protein GI150864044 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0734787 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.41286 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GGAAAAATTG ACGATATTCC CCAGATCGAC GAGTTGTACC ACGAAAAGAA TGTTCATGTA 
GTCAATGGAG ACAACAAGGC ATCGCGATTC CACGTTGATT TGTATCAATT GGACAAAAAT
GAAGCTGGAG TACGTCATTC TGCTCTTTTA GACGGGAACC ACTACTTTCA GTTTGAAAAC
TTGAAGACTG GCGAATACGA ATTGATTGTA GACTCCTATG ATTTCATCTT GTCCAACTCA
AGATTCAGAG TACAAGTAGA CGAAGAGGCT GATATAGTGC AAGTATTTGA AGACTATTTA
GCCAGCCGCA GTTTCAACCG GAGTTCGATC TTTAACGTTA CCGAATCGAC TCCTTTGGTG
CTTTCAGTCA AGGAGCCGAA GCAGTTTTAT GAAAGTGCCC TGGGCTCCAT CATGGATATG
GTGTATAATA GTCCACTTGG CTTTATCTTC AAAAACAGAT TGTACACCAT TATATTTTTC
ATCTGTCTAT CAATCATGGC TGCACCTACT ATACTCCAAT ATATCAACCC AGAGTTGGCA
 
Protein sequence
GKIDDIPQID ELYHEKNVHV VNGDNKASRF HVDLYQLDKN EAGVRHSALL DGNHYFQFEN 
LKTGEYELIV DSYDFILSNS RFRVQVDEEA DIVQVFEDYL ASRSFNRSSI FNVTESTPLV
LSVKEPKQFY ESASGSIMDM VYNSPLGFIF KNRLYTIIFF ICLSIMAAPT ILQYINPELA