Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cthe_3190 |
Symbol | |
ID | 4809492 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium thermocellum ATCC 27405 |
Kingdom | Bacteria |
Replicon accession | NC_009012 |
Strand | + |
Start bp | 3771324 |
End bp | 3773456 |
Gene Length | 2133 bp |
Protein Length | 710 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640108624 |
Product | RecD/TraA family helicase |
Protein accession | YP_001039578 |
Protein GI | 125975668 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.56818 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGAGCGGAG TCGTAGAAAG GATAACATTT GTTAATGAAG AGAATGGCTT TTCTGTCGTA AAAATAAAGT CGAAAGGTTT TTCAGACCTG GTGACGGCAG TGGGGAATAT GGCTTCGGTA AATGTCGGAG CCGTCGTAAG CCTTCGAGGG GAGTGGAAAT ACGACTCTAA GTTTGGCAGG CAGTTCAATG TATACCATTA CGAAGAATCA ATACCTGCCA CTGTTGCCGG TATTGAAAAG TATTTGGGAA GCGGACTTAT TAAGGGAATA GGGCCTGTTA ATGCCAAAAG GATTGTAAAA GTGTTTAAAG AAGACACCAT AAGGGTAATT GAGGAGGAAC CCGACAGGCT CATTGAAGTT CCCGGCATAG GGAAAAAACG GGTGGAAATG ATAAAAGAGG CGTGGCAGAA TCAAAAGGAA ATAAAGAATG TCATGCTTTT TTTGCAGTCC CACGGTGTTT CTACGGCGTT TGCCGTGAAA ATATTTAAAA CATACGGAAG TGACAGCATA AAAATTGTAA AGGAAAACCC ATACAGACTT GCGGATGACA TATGGGGAAT CGGTTTTAAA ACCGCGGACA AAATAGCCCA AAATATGGGA TATGACAAGG AGTCTTATGC ACGCATCAGG TCCGGCATAA TGTATGCATT AAACGAATTT GCCAATGACG GACATTGCTT TGCCAAAAAA GACGAACTTG TAAATAAGGC TTCGGAGCTG CTTGGGGTTG AGTTGGAGAA AGTGGAGACT GCCATACAGC ATATGCTGGA AGAGAAATCC GTAATAATGG AAGAAGATGA TGCGGTTTAC CTCCCGCCTT TTTATTACAG TGAAGTGGGA GTTGCCAGAA GAATACGGGA GATAATTGAG ACTAAAAGCA TGTACAGCTT TTACAATTTT GATGGGATAA TAGAGGACCT CCAAAGAGAA TGCAATATTC AATATGACGA AGTGCAGATT GAAGCCATCA GAAAAGCGGT TGTGTCAAAA TTCATGGTTC TTACCGGCGG TCCGGGCACC GGTAAGACTA CAACCACTCT TGCGATAATA AAGGTATTTC AAAAACTGGG TGCCACAGTC CTCCTTGCCG CACCAACCGG AAGAGCGGCA AAGCGTATGT CTGAAGCTAC CGGTATGGAG GCAAAGACCA TACACCGTTT GCTGGAATAC AGTCCTCAGG ACGGATATAA AAAAAATGAC GACAATCCTT TGGAGTGTGA TGTGCTAATC ATTGATGAGA CTTCAATGAT TGACATTATC TTGATGTACA ATCTTCTTAA AGCCGTTTCA AACAATACGG TGGTGATACT GGTTGGGGAC GTGGACCAGC TTGCTTCGGT GGGAGCAGGA AATGTACTGA AAGACATTAT AGAATCGGGT ATGGTAACTG TGGTAAGGCT TATGAGGATA TTCCGGCAGG CCATGGGAAG CGCGATAGTA ACCAATGCGC ATAAAATAAA CCATGGTGAG TATCCGGTCT TAAAAGGCGG CAAAAACAGT AACTTTTTCT TCATTGAAGA AGAGGACCCG GAAAAGATTG TAGAACTTGT CCGGGAGCTT TGTTCAAAAC GGCTTCCCGG CTACTACAAA ATAAATCCTC TAAATGACAT TCAGGTTTTG TGTCCCATGC AAAAGGGAGT GGTGGGAGCG CAAAATCTCA ATACAGTGCT TCAGGAGACT CTAAATCCCT GCGATATTTC CATAAAATAC GGCGGCACAA TTTACAAATT AAATGACAGG GTAATGCAGA TTAAGAACAA TTATGATAAA AACGTATTTA ACGGAGACAT GGGGATAATA ACGGACATTG ACCAGGAAGA GAAAACCGTG CGCATAAAGT TTGATGATGC CGAGGTTGAG TATGATGTGA CGGAGCTGGA CGAGGTTACT CTGGCATATG CAGTCACGGT CCATAAAAGC CAGGGGAGTG AGTACAACTT TGTGGTGGCA CCCTTTACAA TGCAGCATTA CATGATGCTT CAAAGAAACC TTTTATACAC ATGCGTTACA AGAGCCAAAA AAGTCCTCGT GCTGATAGGT TCAAAAAAGG CGCTGGGGTG TTGCATAAGA AATTCCAGAA GTATGGACAG AAATACCAAA CTTGCCCAAA GACTTAAAGC AGATACGAAT TAA
|
Protein sequence | MSGVVERITF VNEENGFSVV KIKSKGFSDL VTAVGNMASV NVGAVVSLRG EWKYDSKFGR QFNVYHYEES IPATVAGIEK YLGSGLIKGI GPVNAKRIVK VFKEDTIRVI EEEPDRLIEV PGIGKKRVEM IKEAWQNQKE IKNVMLFLQS HGVSTAFAVK IFKTYGSDSI KIVKENPYRL ADDIWGIGFK TADKIAQNMG YDKESYARIR SGIMYALNEF ANDGHCFAKK DELVNKASEL LGVELEKVET AIQHMLEEKS VIMEEDDAVY LPPFYYSEVG VARRIREIIE TKSMYSFYNF DGIIEDLQRE CNIQYDEVQI EAIRKAVVSK FMVLTGGPGT GKTTTTLAII KVFQKLGATV LLAAPTGRAA KRMSEATGME AKTIHRLLEY SPQDGYKKND DNPLECDVLI IDETSMIDII LMYNLLKAVS NNTVVILVGD VDQLASVGAG NVLKDIIESG MVTVVRLMRI FRQAMGSAIV TNAHKINHGE YPVLKGGKNS NFFFIEEEDP EKIVELVREL CSKRLPGYYK INPLNDIQVL CPMQKGVVGA QNLNTVLQET LNPCDISIKY GGTIYKLNDR VMQIKNNYDK NVFNGDMGII TDIDQEEKTV RIKFDDAEVE YDVTELDEVT LAYAVTVHKS QGSEYNFVVA PFTMQHYMML QRNLLYTCVT RAKKVLVLIG SKKALGCCIR NSRSMDRNTK LAQRLKADTN
|
| |