Gene Cthe_3190 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_3190 
Symbol 
ID4809492 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand
Start bp3771324 
End bp3773456 
Gene Length2133 bp 
Protein Length710 aa 
Translation table11 
GC content43% 
IMG OID640108624 
ProductRecD/TraA family helicase 
Protein accessionYP_001039578 
Protein GI125975668 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.56818 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGCGGAG TCGTAGAAAG GATAACATTT GTTAATGAAG AGAATGGCTT TTCTGTCGTA 
AAAATAAAGT CGAAAGGTTT TTCAGACCTG GTGACGGCAG TGGGGAATAT GGCTTCGGTA
AATGTCGGAG CCGTCGTAAG CCTTCGAGGG GAGTGGAAAT ACGACTCTAA GTTTGGCAGG
CAGTTCAATG TATACCATTA CGAAGAATCA ATACCTGCCA CTGTTGCCGG TATTGAAAAG
TATTTGGGAA GCGGACTTAT TAAGGGAATA GGGCCTGTTA ATGCCAAAAG GATTGTAAAA
GTGTTTAAAG AAGACACCAT AAGGGTAATT GAGGAGGAAC CCGACAGGCT CATTGAAGTT
CCCGGCATAG GGAAAAAACG GGTGGAAATG ATAAAAGAGG CGTGGCAGAA TCAAAAGGAA
ATAAAGAATG TCATGCTTTT TTTGCAGTCC CACGGTGTTT CTACGGCGTT TGCCGTGAAA
ATATTTAAAA CATACGGAAG TGACAGCATA AAAATTGTAA AGGAAAACCC ATACAGACTT
GCGGATGACA TATGGGGAAT CGGTTTTAAA ACCGCGGACA AAATAGCCCA AAATATGGGA
TATGACAAGG AGTCTTATGC ACGCATCAGG TCCGGCATAA TGTATGCATT AAACGAATTT
GCCAATGACG GACATTGCTT TGCCAAAAAA GACGAACTTG TAAATAAGGC TTCGGAGCTG
CTTGGGGTTG AGTTGGAGAA AGTGGAGACT GCCATACAGC ATATGCTGGA AGAGAAATCC
GTAATAATGG AAGAAGATGA TGCGGTTTAC CTCCCGCCTT TTTATTACAG TGAAGTGGGA
GTTGCCAGAA GAATACGGGA GATAATTGAG ACTAAAAGCA TGTACAGCTT TTACAATTTT
GATGGGATAA TAGAGGACCT CCAAAGAGAA TGCAATATTC AATATGACGA AGTGCAGATT
GAAGCCATCA GAAAAGCGGT TGTGTCAAAA TTCATGGTTC TTACCGGCGG TCCGGGCACC
GGTAAGACTA CAACCACTCT TGCGATAATA AAGGTATTTC AAAAACTGGG TGCCACAGTC
CTCCTTGCCG CACCAACCGG AAGAGCGGCA AAGCGTATGT CTGAAGCTAC CGGTATGGAG
GCAAAGACCA TACACCGTTT GCTGGAATAC AGTCCTCAGG ACGGATATAA AAAAAATGAC
GACAATCCTT TGGAGTGTGA TGTGCTAATC ATTGATGAGA CTTCAATGAT TGACATTATC
TTGATGTACA ATCTTCTTAA AGCCGTTTCA AACAATACGG TGGTGATACT GGTTGGGGAC
GTGGACCAGC TTGCTTCGGT GGGAGCAGGA AATGTACTGA AAGACATTAT AGAATCGGGT
ATGGTAACTG TGGTAAGGCT TATGAGGATA TTCCGGCAGG CCATGGGAAG CGCGATAGTA
ACCAATGCGC ATAAAATAAA CCATGGTGAG TATCCGGTCT TAAAAGGCGG CAAAAACAGT
AACTTTTTCT TCATTGAAGA AGAGGACCCG GAAAAGATTG TAGAACTTGT CCGGGAGCTT
TGTTCAAAAC GGCTTCCCGG CTACTACAAA ATAAATCCTC TAAATGACAT TCAGGTTTTG
TGTCCCATGC AAAAGGGAGT GGTGGGAGCG CAAAATCTCA ATACAGTGCT TCAGGAGACT
CTAAATCCCT GCGATATTTC CATAAAATAC GGCGGCACAA TTTACAAATT AAATGACAGG
GTAATGCAGA TTAAGAACAA TTATGATAAA AACGTATTTA ACGGAGACAT GGGGATAATA
ACGGACATTG ACCAGGAAGA GAAAACCGTG CGCATAAAGT TTGATGATGC CGAGGTTGAG
TATGATGTGA CGGAGCTGGA CGAGGTTACT CTGGCATATG CAGTCACGGT CCATAAAAGC
CAGGGGAGTG AGTACAACTT TGTGGTGGCA CCCTTTACAA TGCAGCATTA CATGATGCTT
CAAAGAAACC TTTTATACAC ATGCGTTACA AGAGCCAAAA AAGTCCTCGT GCTGATAGGT
TCAAAAAAGG CGCTGGGGTG TTGCATAAGA AATTCCAGAA GTATGGACAG AAATACCAAA
CTTGCCCAAA GACTTAAAGC AGATACGAAT TAA
 
Protein sequence
MSGVVERITF VNEENGFSVV KIKSKGFSDL VTAVGNMASV NVGAVVSLRG EWKYDSKFGR 
QFNVYHYEES IPATVAGIEK YLGSGLIKGI GPVNAKRIVK VFKEDTIRVI EEEPDRLIEV
PGIGKKRVEM IKEAWQNQKE IKNVMLFLQS HGVSTAFAVK IFKTYGSDSI KIVKENPYRL
ADDIWGIGFK TADKIAQNMG YDKESYARIR SGIMYALNEF ANDGHCFAKK DELVNKASEL
LGVELEKVET AIQHMLEEKS VIMEEDDAVY LPPFYYSEVG VARRIREIIE TKSMYSFYNF
DGIIEDLQRE CNIQYDEVQI EAIRKAVVSK FMVLTGGPGT GKTTTTLAII KVFQKLGATV
LLAAPTGRAA KRMSEATGME AKTIHRLLEY SPQDGYKKND DNPLECDVLI IDETSMIDII
LMYNLLKAVS NNTVVILVGD VDQLASVGAG NVLKDIIESG MVTVVRLMRI FRQAMGSAIV
TNAHKINHGE YPVLKGGKNS NFFFIEEEDP EKIVELVREL CSKRLPGYYK INPLNDIQVL
CPMQKGVVGA QNLNTVLQET LNPCDISIKY GGTIYKLNDR VMQIKNNYDK NVFNGDMGII
TDIDQEEKTV RIKFDDAEVE YDVTELDEVT LAYAVTVHKS QGSEYNFVVA PFTMQHYMML
QRNLLYTCVT RAKKVLVLIG SKKALGCCIR NSRSMDRNTK LAQRLKADTN