Gene Cthe_3078 details

Gene Information

• Locus tag: Cthe_3078
• ID: 4809952
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: +
• Start bp: 3625229
• End bp: 3632170
• Gene Length: 6942 bp
• Protein Length: 2313 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640108502
• Product: cellulosome anchoring protein, cohesin region
• Protein accession: YP_001039467
• Protein GI: 125975557
• TIGRFAM ID: [TIGR01451] conserved repeat domain

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACGAA AAAATAAAGT ATTATCAATT TTGTTAACTC TGCTGCTAAT AATCTCTACC 
ACATCCGTAA ACATGTCTTT TGCTGAAGCA ACTCCAAGTA TTGAAATGGT TCTTGATAAA 
ACTGAAGTCC ATGTAGGAGA TGTAATAACG GCCACAATAA AAGTCAATAA CATTAGAAAA 
TTGGCGGGAT ATCAGCTAAA TATCAAATTT GACCCTGAAG TTTTACAGCC GGTAGACCCT 
GCAACAGGAG AGGAATTTAC TGATAAGTCC ATGCCGGTAA ATAGGGTTTT GCTGACAAAC 
AGCAAATATG GACCTACTCC TGTGGCGGGT AACGATATAA AGTCAGGAAT TATTAATTTT 
GCTACGGGAT ATAACAATTT AACAGCGTAC AAATCCAGCG GAATAGACGA ACATACAGGA 
ATAATAGGAG AGATTGGTTT TAAAGTTTTA AAGAAACAAA ATACGTCTAT TAGGTTTGAA 
GATACATTAT CGATGCCCGG GGCAATATCG GGAACAAGTT TGTTTGACTG GGATGCAGAA 
ACTATAACAG GATATGAGGT AATACAGCCG GATCTTATAG TTGTAGAGGC AGAACCGTTA 
AAAGACGCCA GCGTGGCTCT GGAACTGGAT AAGACGAAGG TAAAAGTAGG GGACATAATA 
ACAGCGACGA TAAAGATAGA GAACATGAAG AATTTTGCAG GGTACCAGTT GAATATCAAG 
TATGACCCGA CCATGTTGGA GGCAATAGAA CTGGAGACAG GAAGTGCGAT AGCGAAGAGG 
ACATGGCCGG TTACAGGAGG TACTGTTCTG CAAAGTGACA ATTATGGAAA GACGACTGCG 
GTAGCGAATG ATGTAGGAGC AGGTATAATA AACTTTGCTG AGGCATACTC GAACCTTACC 
AAATACAGAG AGACAGGTGT GGCAGAAGAG ACAGGTATAA TAGGAAAGAT AGGCTTCAGA 
GTGCTGAAGG CAGGAAGTAC GGCTATAAGA TTTGAGGATA CGACAGCGAT GCCGGGAGCA 
ATAGAAGGAA CATACATGTT CGACTGGTAT GGCGAGAACA TCAAAGGGTA TAGCGTAGTA 
CAGCCTGGGG AAATAGTGGT AGAAGGAGAA GAGCCGGGTG AAGAGCCGAC AGAAGAGCCT 
GTACCGACAG AGACATCGGT AGATCCCACA CCGACAGTGA CAGAAGAGCC TGTACCTTCA 
GAGCTTCCAG ATTCCTATGT GATAATGGAA CTGGATAAGA CGAAGGTAAA AGTAGGGGAC 
ATAATAACAG CGACGATAAA GATAGAGAAC ATGAAGAATT TTGCAGGGTA CCAGTTGAAT 
ATCAAGTATG ACCCGACCAT GTTGGAGGCA ATAGAACTGG AGACAGGAAG CGCGATAGCG 
AAGAGGACAT GGCCGGTTAC AGGAGGTACT GTTCTGCAAA GTGACAATTA TGGAAAGACG 
ACTGCGGTAG CGAATGATGT AGGAGCAGGT ATAATAAACT TTGCTGAGGC ATACTCGAAC 
CTTACCAAAT ACAGAGAGAC AGGTGTGGCA GAGGAGACAG GTATAATAGG AAAGATAGGC 
TTCAGAGTGC TGAAGGCAGG AAGTACGGCT ATAAGATTTG AGGATACGAC AGCGATGCCG 
GGAGCAATAG AAGGAACATA CATGTTCGAC TGGTATGGCG AGAACATCAA AGGGTATAGC 
GTAGTACAGC CTGGGGAAAT AGTGGTAGAA GGAGAAGAGC CGGGTGAAGA GCCGACAGAA 
GAGCCTGTAC CGACAGAGAC ATCGGTAGAT CCCACACCGA CAGTGACAGA AGAGCCTGTA 
CCTTCAGAGC TTCCAGATTC CTATGTGATA ATGGAACTGG ATAAGACGAA GGTAAAAGTA 
GGGGACATAA TAACAGCGAC GATAAAGATA GAGAACATGA AGAATTTTGC AGGGTACCAG 
TTGAATATCA AGTATGACCC GACCATGTTG GAGGCAATAG AACTGGAGAC AGGAAGCGCG 
ATAGCGAAGA GGACATGGCC GGTTACAGGA GGTACTGTTC TGCAAAGTGA CAATTATGGA 
AAGACGACTG CGGTAGCGAA TGATGTAGGA GCAGGTATAA TAAACTTTGC TGAGGCATAC 
TCGAACCTTA CCAAATACAG AGAGACAGGT GTGGCAGAGG AGACAGGTAT AATAGGAAAG 
ATAGGCTTCA GAGTGCTGAA GGCAGGAAGT ACGGCTATAA GATTTGAGGA TACGACAGCG 
ATGCCGGGAG CAATAGAAGG AACATACATG TTCGACTGGT ATGGCGAGAA CATCAAAGGG 
TATAGCGTAG TACAGCCTGG GGAAATAGTG GCAGAAGGAG AAGAGCCGGG TGAAGAGCCG 
ACAGAAGAGC CTGTACCGAC AGAGACATCG GCAGATCCCA CACCGACAGT GACAGAAGAG 
CCTGTACCTT CAGAGCTTCC AGATTCCTAT GTGATAATGG AACTGGATAA GACGAAGGTA 
AAAGTAGGGG ACATAATAAC AGCGACGATA AAGATAGAGA ACATGAAGAA TTTTGCAGGG 
TACCAGTTGA ATATCAAGTA TGACCCGACC ATGTTGGAGG CAATAGAACT GGAGACAGGA 
AGTGCGATAG CGAAGAGGAC ATGGCCGGTT ACAGGAGGTA CTGTTCTGCA AAGTGACAAT 
TATGGAAAGA CGACTGCGGT AGCGAATGAT GTAGGAGCAG GTATAATAAA CTTTGCTGAG 
GCATACTCGA ACCTTACCAA ATACAGAGAG ACAGGTGTGG CAGAGGAGAC AGGTATAATA 
GGAAAGATAG GCTTCAGAGT ACTGAAGGCA GGAAGTACGG CTATAAGATT TGAGGATACG 
ACAGCGATGC CGGGAGCAAT AGAAGGAACA TACATGTTCG ACTGGTATGG CGAGAACATC 
AAAGGGTATA GCGTAGTACA GCCTGGGGAA ATAGTGGCAG AAGGAGAAGA GCCGGGTGAA 
GAGCCGACAG AAGAGCCTGT ACCGACAGAG ACACCAGTAG ATCCCACACC GACAGTGACA 
GAAGAGCCTG TACCTTCAGA GCTTCCAGAT TCCTATGTAA TAATGGAACT GGATAAGACG 
AAGGTAAAAG TAGGGGACAT AATAACAGCG ACGATAAAGA TAGAGAACAT GAAGAATTTT 
GCAGGGTACC AGTTGAATAT CAAGTATGAC CCGACCATGT TGGAGGCAAT AGAACTGGAG 
ACAGGAAGTG CGATAGCGAA GAGGACATGG CCGGTTACAG GAGGTACTGT TCTGCAAAGT 
GACAATTATG GAAAGACGAC TGCGGTAGCG AATGATGTAG GAGCAGGTAT AATAAACTTT 
GCTGAGGCAT ACTCGAACCT TACCAAATAC AGAGAGACAG GTGTGGCAGA GGAGACAGGT 
ATAATAGGAA AGATAGGCTT CAGAGTACTG AAGGCAGGAA GTACGGCTAT AAGATTTGAG 
GATACGACAG CGATGCCGGG AGCAATAGAA GGAACATACA TGTTCGACTG GTATGGCGAG 
AACATCAAAG GGTATAGCGT AGTACAGCCT GGGGAAATAG TGGCGGAAGG AGAAGAGCCG 
ACAGAAGAGC CTGTACCGAC AGAGACACCA GTAGATCCCA CACCGACAGT GACAGAAGAG 
CCTGTACCTT CAGAGCTTCC AGATTCCTAT GTGATAATGG AATTGGATAA GACGAAGGTA 
AAAGAAGGCG ACGTAATAAT AGCAACAATA AGAGTAAATA ACATAAAGAA TCTTGCCGGA 
TATCAGATAG GCATCAAATA TGACCCGAAA GTATTAGAGG CATTTAATAT CGAGACAGGG 
GACCCAATAG ATGAAGGAAC ATGGCCTGCA GTAGGGGGAA CAATACTGAA GAATAGAGAT 
TACCTGCCGA CTGGGGTAGC AATAAACAAT GTATCTAAAG GAATACTGAA TTTTGCTGCT 
TATTACGTTT ACTTCGATGA CTATAGAGAG GAAGGAAAGT CAGAAGATAC AGGAATTATA 
GGAAATATAG GCTTTAGAGT ACTGAAGGCG GAAGATACAA CGATAAGATT TGAAGAGCTG 
GAGTCAATGC CGGGTTCAAT AGACGGAACA TATATGTTGG ATTGGTATCT TAATAGAATC 
TCTGGCTATG TAGTAATACA ACCGGCGCCT ATAAAGGCGG CTAGTGACGA ACCAATACCA 
ACGGATACAC CATCAGATGA ACCGACACCG TCAGACGAGC CAACGCCATC TGACGAACCG 
ACACCGTCTG ATGAGCCAAC ACCGTCAGAT GAACCGACTC CGTCAGAGAC ACCTGAGGAG 
CCGATACCGA CGGATACACC ATCAGATGAA CCGACACCAT CAGACGAGCC AACGCCATCT 
GATGAACCAA CACCGTCTGA TGAGCCAACA CCATCTGATG AACCGACTCC GTCAGAGACA 
CCTGAGGAGC CGATACCGAC GGATACACCA TCAGATGAAC CGACACCGTC AGACGAGCCA 
ACGCCATCTG ACGAACCAAC ACCGTCTGAT GAGCCAACAC CGTCAGATGA ACCGACTCCG 
TCAGAGACAC CTGAGGAGCC GATACCGACG GATACACCAT CAGATGAACC GACACCGTCA 
GACGAGCCAA CGCCATCTGA CGAACCAACA CCGTCTGATG AGCCAACACC GTCAGATGAA 
CCGACTCCGT CAGAGACACC TGAGGAGCCG ATACCGACGG ATACACCATC AGATGAACCG 
ACACCGTCAG ACGAGCCGAC ACCATCTGAC GAACCAACAC CGTCAGACGA GCCAACGCCA 
TCTGACGAAC CGACACCGTC TGATGAGCCA ACACCATCTG ATGAACCGAC TCCGTCAGAG 
ACACCTGAGG AGCCGATACC GACGGATACA CCATCAGATG AACCGACACC GTCAGACGAG 
CCGACACCAT CTGACGAACC AACACCGTCA GACGAGCCAA CGCCATCTGA CGAACCGACA 
CCGTCTGATG AGCCAACACC ATCTGATGAA CCGACTCCGT CAGAGACACC TGAGGAGCCG 
ATACCGACGG ATACACCATC AGATGAACCG ACACCGTCAG ACGAGCCGAC ACCATCTGAC 
GAACCAACAC CGTCTGATGA GCCAACACCG TCAGATGAAC CGACTCCGTC AGAGACACCT 
GAGGAGCCGA TACCGACGGA TACACCATCA GATGAACCGA CACCGTCAGA CGAGCCAACG 
CCATCTGACG AACCGACACC GTCTGATGAG CCAACACCGT CAGATGAACC GACTCCGTCA 
GAGACACCTG AGGAGCCGAT ACCGACGGAT ACACCATCAG ATGAACCGAC ACCGTCAGAC 
GAGCCAACGC CATCTGACGA ACCGACACCG TCTGATGAGC CAACACCGTC AGATGAACCG 
ACTCCGTCAG AGACACCTGA GGAGCCGATA CCGACGGATA CACCATCAGA TGAACCGACA 
CCATCAGACG AGCCAACGCC ATCTGATGAA CCAACACCGT CTGATGAGCC AACACCATCT 
GATGAACCGA CTCCGTCAGA GACACCTGAG GAGCCGATAC CGACGGATAC ACCATCAGAT 
GAACCGACAC CGTCAGACGA GCCAACGCCA TCTGACGAAC CAACACCGTC TGATGAGCCA 
ACACCGTCAG ATGAACCGAC TCCGTCAGAG ACACCTGAGG AGCCGATACC GACGGATACA 
CCATCAGATG AACCGACACC GTCAGACGAG CCAACGCCAT CTGACGAACC AACACCGTCT 
GATGAGCCAA CACCGTCAGA TGAACCGACT CCGTCAGAGA CACCTGAGGA GCCGATACCG 
ACGGATACAC CATCAGATGA ACCGACACCG TCAGACGAGC CGACACCATC TGACGAACCA 
ACACCGTCAG ACGAGCCAAC GCCATCTGAC GAACCGACAC CGTCTGATGA GCCAACACCA 
TCTGATGAAC CGACTCCGTC AGAGACACCT GAGGAGCCGA TACCGACGGA TACACCATCA 
GATGAACCGA CACCGTCAGA CGAGCCGACA CCATCTGACG AACCAACACC GTCAGACGAG 
CCAACGCCAT CTGACGAACC GACACCGTCT GATGAGCCAA CACCATCTGA TGAACCGACT 
CCGTCAGAGA CACCTGAGGA GCCGACACCG ACTACTACAC CGACACCAAC ACCGTCGACA 
ACGCCTACAA GTGGCAGCGG AGGCAGTGGT GGAAGCGGTG GTGGCGGCGG AGGTGGTGGA 
GGAACTGTAC CTACATCTCC AACACCGACA CCGACATCTA AACCGACGTC TACACCTGCA 
CCGACAGAAA TCGAAGAGCC TACACCATCT GATGTGCCTG GTGCAATCGG TGGAGAACAT 
AGAGCATACT TAAGAGGATA TCCGGATGGA AGCTTCAGGC CTGAAAGAAA TATAACAAGA 
GCTGAAGCGG CGGTAATCTT TGCTAAGTTG CTTGGAGCCG ATGAAAGCTA TGGAGCTCAG 
TCTGCAAGTC CATATAGTGA TTTGGCTGAT ACTCACTGGG CTGCATGGGC AATCAAATTT 
GCAACAAGCC AGGGCTTGTT CAAAGGATAT CCGGACGGTA CGTTTAAACC TGATCAGAAC 
ATAACGAGAG CGGAATTCGC AACTGTGGTA CTCCACTTCC TGACAAAAGT TAAGGGTCAG 
GAAATAATGA GCAAGCTTGC AACAATAGAT ATAAGTAATC CGAAGTTTGA CGATTGTGTC 
GGACATTGGG CACAAGAGTT TATTGAGAAA TTGACAAGCT TGGGTTATAT TAGTGGCTAT 
CCTGACGGAA CGTTCAAGCC GCAAAACTAT ATTAAACGTT CCGAAAGTGT GGCACTGATT 
AACAGAGCTC TGGAGAGAGG TCCGCTTAAT GGAGCGCCGA AGCTCTTCCC GGATGTTAAC 
GAATCATACT GGGCATTTGG CGACATTATG GACGGTGCTC TCGACCACAG TTACATTATC 
GAAGATGAGA AAGAAAAATT CGTTAAATTG CTCGAAGATT AA 

 

Protein sequence

MKRKNKVLSI LLTLLLIIST TSVNMSFAEA TPSIEMVLDK TEVHVGDVIT ATIKVNNIRK 
LAGYQLNIKF DPEVLQPVDP ATGEEFTDKS MPVNRVLLTN SKYGPTPVAG NDIKSGIINF 
ATGYNNLTAY KSSGIDEHTG IIGEIGFKVL KKQNTSIRFE DTLSMPGAIS GTSLFDWDAE 
TITGYEVIQP DLIVVEAEPL KDASVALELD KTKVKVGDII TATIKIENMK NFAGYQLNIK 
YDPTMLEAIE LETGSAIAKR TWPVTGGTVL QSDNYGKTTA VANDVGAGII NFAEAYSNLT 
KYRETGVAEE TGIIGKIGFR VLKAGSTAIR FEDTTAMPGA IEGTYMFDWY GENIKGYSVV 
QPGEIVVEGE EPGEEPTEEP VPTETSVDPT PTVTEEPVPS ELPDSYVIME LDKTKVKVGD 
IITATIKIEN MKNFAGYQLN IKYDPTMLEA IELETGSAIA KRTWPVTGGT VLQSDNYGKT 
TAVANDVGAG IINFAEAYSN LTKYRETGVA EETGIIGKIG FRVLKAGSTA IRFEDTTAMP 
GAIEGTYMFD WYGENIKGYS VVQPGEIVVE GEEPGEEPTE EPVPTETSVD PTPTVTEEPV 
PSELPDSYVI MELDKTKVKV GDIITATIKI ENMKNFAGYQ LNIKYDPTML EAIELETGSA 
IAKRTWPVTG GTVLQSDNYG KTTAVANDVG AGIINFAEAY SNLTKYRETG VAEETGIIGK 
IGFRVLKAGS TAIRFEDTTA MPGAIEGTYM FDWYGENIKG YSVVQPGEIV AEGEEPGEEP 
TEEPVPTETS ADPTPTVTEE PVPSELPDSY VIMELDKTKV KVGDIITATI KIENMKNFAG 
YQLNIKYDPT MLEAIELETG SAIAKRTWPV TGGTVLQSDN YGKTTAVAND VGAGIINFAE 
AYSNLTKYRE TGVAEETGII GKIGFRVLKA GSTAIRFEDT TAMPGAIEGT YMFDWYGENI 
KGYSVVQPGE IVAEGEEPGE EPTEEPVPTE TPVDPTPTVT EEPVPSELPD SYVIMELDKT 
KVKVGDIITA TIKIENMKNF AGYQLNIKYD PTMLEAIELE TGSAIAKRTW PVTGGTVLQS 
DNYGKTTAVA NDVGAGIINF AEAYSNLTKY RETGVAEETG IIGKIGFRVL KAGSTAIRFE 
DTTAMPGAIE GTYMFDWYGE NIKGYSVVQP GEIVAEGEEP TEEPVPTETP VDPTPTVTEE 
PVPSELPDSY VIMELDKTKV KEGDVIIATI RVNNIKNLAG YQIGIKYDPK VLEAFNIETG 
DPIDEGTWPA VGGTILKNRD YLPTGVAINN VSKGILNFAA YYVYFDDYRE EGKSEDTGII 
GNIGFRVLKA EDTTIRFEEL ESMPGSIDGT YMLDWYLNRI SGYVVIQPAP IKAASDEPIP 
TDTPSDEPTP SDEPTPSDEP TPSDEPTPSD EPTPSETPEE PIPTDTPSDE PTPSDEPTPS 
DEPTPSDEPT PSDEPTPSET PEEPIPTDTP SDEPTPSDEP TPSDEPTPSD EPTPSDEPTP 
SETPEEPIPT DTPSDEPTPS DEPTPSDEPT PSDEPTPSDE PTPSETPEEP IPTDTPSDEP 
TPSDEPTPSD EPTPSDEPTP SDEPTPSDEP TPSDEPTPSE TPEEPIPTDT PSDEPTPSDE 
PTPSDEPTPS DEPTPSDEPT PSDEPTPSDE PTPSETPEEP IPTDTPSDEP TPSDEPTPSD 
EPTPSDEPTP SDEPTPSETP EEPIPTDTPS DEPTPSDEPT PSDEPTPSDE PTPSDEPTPS 
ETPEEPIPTD TPSDEPTPSD EPTPSDEPTP SDEPTPSDEP TPSETPEEPI PTDTPSDEPT 
PSDEPTPSDE PTPSDEPTPS DEPTPSETPE EPIPTDTPSD EPTPSDEPTP SDEPTPSDEP 
TPSDEPTPSE TPEEPIPTDT PSDEPTPSDE PTPSDEPTPS DEPTPSDEPT PSETPEEPIP 
TDTPSDEPTP SDEPTPSDEP TPSDEPTPSD EPTPSDEPTP SDEPTPSETP EEPIPTDTPS 
DEPTPSDEPT PSDEPTPSDE PTPSDEPTPS DEPTPSDEPT PSETPEEPTP TTTPTPTPST 
TPTSGSGGSG GSGGGGGGGG GTVPTSPTPT PTSKPTSTPA PTEIEEPTPS DVPGAIGGEH 
RAYLRGYPDG SFRPERNITR AEAAVIFAKL LGADESYGAQ SASPYSDLAD THWAAWAIKF 
ATSQGLFKGY PDGTFKPDQN ITRAEFATVV LHFLTKVKGQ EIMSKLATID ISNPKFDDCV 
GHWAQEFIEK LTSLGYISGY PDGTFKPQNY IKRSESVALI NRALERGPLN GAPKLFPDVN 
ESYWAFGDIM DGALDHSYII EDEKEKFVKL LED