Gene Cthe_3049 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_3049 
Symbol 
ID4811121 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand
Start bp3575203 
End bp3576978 
Gene Length1776 bp 
Protein Length591 aa 
Translation table11 
GC content38% 
IMG OID640108470 
ProductTPR repeat-containing protein 
Protein accessionYP_001039438 
Protein GI125975528 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000157665 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACCA CATTAAAATC AATTATCATA ATTTTTATTA TCCTATTCTC CCTTTCTTTA 
CTGACTTCCA TATCCTATGC TGACTCAGCC ATGCAATATT TTAGCGAAGG AAACTCTTTA
TTCGAAGCCG GAAAAATTGA GGAAGCAATA CAAAGTTACA ACAAAGCTAT TGAGCTCAAT
CCCAACCTTG CCGAAATTCA CTATAATAAA GGGGTTGCTC TGTTCAATCT GAAAAAATAC
AATGAAGCAA TTGAATCCTA CAACCGTTCA ATTGAATTAG CGCCCAACTT TAAGGAAGCT
TATCTAAACA AATCAATATG TCTGCTGGTT GTCAGCAAAT TTGAAGAAGC TCTCGAAACC
GTCAACAAAT TCATTGAGAT GTCCCCCAAC GAACCTAACG GATACACAGT AAAAGGTTCC
ATCCTGATAA TGATTGAAAA GTATGAAGAA GCTCTGGAAG TATCCAATAA AGTAATTGCC
ATGAATCCTA ATAACCAATC TGTGCTTTCC GTCGCATATT CCAATAAAGG TTATGCTTTA
GTGTGGCTCA AAAAACCCAA AGAAGCCTTG GAAGCATGTA ACAAATCTCT TGAGCTTTCC
GGCGACAATC TTGACGCACA CATAGCCATA AGCTTGGCAC ATTCTTCTTT AGGTAACTAT
GAAGAAGCGG TTAATTGGTG TGACAAAGCC ATTAAAATCG ATCCCAATGC AGTTGAGCCA
TACATTAATA AATCCAACTA TCTTGTAAAT TTAGGAAAAT CCAAAGAAGC GCTTGAATGC
TGTAGCAAAG CATCAGAATT AAACGTTCCT CAAAATCCTG TTTATGAATC AATCATTCTC
ACGAATAAAT CAGCGGCGCT AATTTTTGAA AATAATTACG AAGAAGCCCT TGCGGCAGCT
GAAAAAGCCA TAGAGTTAGA TCCTAAAAAT GCTCTTGCGT ATGTCAACAA AGCCAATGCA
CTAAACATGG CGGGTAGTTA TGATGAAGCT CTTTCATTCA GCGACAAGGC AATCGAAATT
GATCCAGATT GTGGTGAAGC CTATGGCGCA AAAGGAAGTG CACTATTCTA TCTTGGCAGA
TTTGATGAAT CAATAGAGAC ATGCAAAAAG GCCATTGAAT TAAGTCCTGA GAACATTATC
CTTTGTGTTC AGGCATATAC CAATATAGGA AGTTCTTTGT CTGAAAAAGG AATGTACGAA
GAAGCTCTGA AAAATCTTGA TAAAGCTCTT GAGTTGCCGT CAAAAAATGC TAAAGCCATC
TCTATTGCCT ACTCAAACAA AGCCTATGCA CTGATTGGTC TTGAAAAATT TGAAGACGCT
CTGGAATGCG CAAACAAGGC TATTGAAGCT GACCCCAGCA ATGTCATGGG ATATTCCAAC
AAAAGCTCCG TTTTGATGAG ACTTTCCAGA TACAAGGAAG CTCTTGAATG CTGTGATGAG
GCTATCAAGC TAAATATAGC CGATTATGCC GTCTATAATA ACAAAGGACT CGCTTTGGAA
AGTCAGGGCA AACTTGGCAA AGCATTGGAA GCGTTCAACA AAAGTCTTGA ACTCAATCCT
GACTATAAAA ATGCCCAAGA CAACATCCAA AGAGTCTCAA CAAAACTTAC TATAAGAAGA
GTCTTACTCA TTTTTGGTAT ATTTGCATTT GTTACGGCAA TAACTATAGC CACCGTAATT
TTCATTGTTT TAAGAAAAAG AAAAACCACA GTACAAAGCA TCAATCCGCC CATGCCCGAA
CCGTTTCTCA ACTACGATGA ACTGAATCAA AAATAA
 
Protein sequence
MKTTLKSIII IFIILFSLSL LTSISYADSA MQYFSEGNSL FEAGKIEEAI QSYNKAIELN 
PNLAEIHYNK GVALFNLKKY NEAIESYNRS IELAPNFKEA YLNKSICLLV VSKFEEALET
VNKFIEMSPN EPNGYTVKGS ILIMIEKYEE ALEVSNKVIA MNPNNQSVLS VAYSNKGYAL
VWLKKPKEAL EACNKSLELS GDNLDAHIAI SLAHSSLGNY EEAVNWCDKA IKIDPNAVEP
YINKSNYLVN LGKSKEALEC CSKASELNVP QNPVYESIIL TNKSAALIFE NNYEEALAAA
EKAIELDPKN ALAYVNKANA LNMAGSYDEA LSFSDKAIEI DPDCGEAYGA KGSALFYLGR
FDESIETCKK AIELSPENII LCVQAYTNIG SSLSEKGMYE EALKNLDKAL ELPSKNAKAI
SIAYSNKAYA LIGLEKFEDA LECANKAIEA DPSNVMGYSN KSSVLMRLSR YKEALECCDE
AIKLNIADYA VYNNKGLALE SQGKLGKALE AFNKSLELNP DYKNAQDNIQ RVSTKLTIRR
VLLIFGIFAF VTAITIATVI FIVLRKRKTT VQSINPPMPE PFLNYDELNQ K