Gene Cthe_2962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_2962 
Symbol 
ID4810850 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand- 
Start bp3480056 
End bp3481084 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content44% 
IMG OID640108384 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001039352 
Protein GI125975442 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAACA TTGAAGCAAA AACTTCTTCA TCCGGCTATA ATTCAGCCCG GAAAAAAGAT 
GTTTTAATAG AAGTGAAAAA TTTAAAGCAA TATTTTAACA TAAAAACCAG CCTTGGTAAA 
AAAGCCACAG TTAAAGCGGT GGATGATGTA ACCTTTGAGA TTTACAAAGG CGAAACCCTC 
GGACTCGTTG GCGAATCCGG TTCAGGTAAA ACCACTTTGG GAAGGACAAT TCTCAGGATT 
TATGAGCCTA CAGCCGGGCG AGTTGTATTT TTGGGAGTTG ATATAACCAA ATTGGGAAGG 
GGACAGCTCC TTCCCTACAG GAAAAAAATG CAGTATATTT TTCAAGACCC TTACGCATCC 
CTCGACCCTC GTATGACCGT TTCGGATATT GTGGGCGAAG CACTGGATAT TCATAGACTG 
GTTTCTTCCA AAAAAGAGAG GGAGGAAAAA GTCAGAGAAC TGTTAAAAAT GGTAGGACTT 
AATACCGAAC ACGCATCCCG TTATCCTCAT GAATTTTCAG GAGGACAGCG CCAAAGAATC 
GGAATAGCCC GGGCTATCGC CGTAGAACCT GAATTTATCG TATGTGACGA GCCGGTATCC 
GCACTTGACG TTTCTATAAG GGCCCAGATA ATTAACACGC TGGAAGAAAT GCAGGAAAGG 
CTGAACCTGA CCTACCTTTT CATCTCCCAT GATTTGGGCG TGGTAAGGCA TACATGTGAC 
AGAGTAGGGG TCATGTACCT GGGACATATA GTGGAACTGG TGGAATCGGA AGAATTGTAC 
AAAAATCCTC TCCATCCATA CACTCAGGCA CTATTGACGG CTATTCCCAG ACCTAATCCT 
GAGATTGCCA AGAAAAGAAA CAGAATTATC TTAAAGGGTG AAATCCCGTC ACCGGTGAAT 
CCGCCATCTG GCTGCAAGTT CAGAACCAGA TGTCCCTATG CAAAGGATAT CTGTGCAAAA 
GAAGTGCCCG AGTTCAAAGA TTACGGAAAC GGTCATTATG TAGCCTGCCA TTTTGCAGGT 
AAATTATGA
 
Protein sequence
MTNIEAKTSS SGYNSARKKD VLIEVKNLKQ YFNIKTSLGK KATVKAVDDV TFEIYKGETL 
GLVGESGSGK TTLGRTILRI YEPTAGRVVF LGVDITKLGR GQLLPYRKKM QYIFQDPYAS 
LDPRMTVSDI VGEALDIHRL VSSKKEREEK VRELLKMVGL NTEHASRYPH EFSGGQRQRI 
GIARAIAVEP EFIVCDEPVS ALDVSIRAQI INTLEEMQER LNLTYLFISH DLGVVRHTCD 
RVGVMYLGHI VELVESEELY KNPLHPYTQA LLTAIPRPNP EIAKKRNRII LKGEIPSPVN 
PPSGCKFRTR CPYAKDICAK EVPEFKDYGN GHYVACHFAG KL