| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2950 |
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| Symbol | |
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| ID | 4810838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | - |
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| Start bp | 3468753 |
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| End bp | 3470417 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640108373 |
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| Product | Pectate lyase/Amb allergen |
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| Protein accession | YP_001039341 |
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| Protein GI | 125975431 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.821566 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCCAGAT GTTGGGTAAA ATGTATTTCT TCAATGTTGG CAATTTCTTT AATATTATTT
GCTTCTTTAA CGTTAACGGC TTCATTAATA GTAGCCTCGT TCTTACCTGC AACCACCACT
TATGCCCAGA CCGTGTCACC TTTGGATAGA CCTATAGGAT GGGCGTCGGA AGCCGGAGGA
ACCACAGGTG GCGGAAATGC TGCACCGGTG ATTGTAACAA GTGCAAGTGA ACTTCAAAAT
CTTGTCAAAG ATAACACTCC AAGAGTTATT TACGTACAGG GAAACATCGG CGGCAACTAT
ACCGTAGGAT CCAACAAAAC CATCATCGGC TTACCCGGCG CAACGACAGG CAGTTGGACG
TTTAAAGGCT CATCCAACGT TATATTGAGA AACCTTAAAA TAAGAGGAAA CGGTGCAGAC
GGCGATGCCG TGACCGTTAC GGACTATTCC CATCATATTT GGTTTGACCA CCTTGATTTG
GCCGACTCAA CCGACGAAAA TCTCAGCATA AAACGCGGAA GCGATTACAT AACCATTTCC
TGGTGCAAAT ACTGGTTTTC AAGGGACGGA GGCCACACAT TCGGAGGCCT GATCGGACAT
AGTGATAATA ACGCAGCGCA GGACGAGGGA AGGCTTAGGG TAACCTATCA TCACAACTGG
TATTCAAAGG GAGTAACAGA GCGTATGCCC CGTGTCCGTT TTGGAAAAGT TCATATTTTC
AACAACCTGT TCGACGCTCC CGGCAACAAT TATGTCATTC GCTGTGGTTA CAAAGCAAAC
ATCCGCTCTG AAGGCAATGT CTTCGTTAAC ATGAAAAATT GCTTTGACTT TAGCACTTCT
TCTCCGGACT CCGTACTCCA GAGCATTAAT GATTTGTTTA TAGGAAATTG TAGCGGAACA
ACCGGAAGAG GTATTGCTTT CGTTCCTCCC TATCAATACA CCGTCGAACC GACCGCGGGA
CTTAAAGAAA AGATTGAAGC AGGGGCGGGA GCAACGTTAA ATGTCCCGGG AACATTCTCC
CCCACACCGT CACCTTCAAA TACCCCTACT GCAACACCAA CACCTGCAAG TATAGTGTAC
GGAGATTTGA ATAATGACGG CAGGACAAAT TCAACTGACT ATTCATTAAT GAAAAGATAC
CTTCTTGGTT CCATAAGCTT TACAAATGAA CAGCTTAAAG CAGCGGATGT AAATCTCGAC
GGTAAAGTAA ACTCCTCTGA TTATACTGTA TTAAGAAGAT TCTTACTGGG TTCGATCGAC
TTGTTGCCAT ATAACGGAAC CGCGACTTAC CAGGCTGAAG ATGCAGTTTT CAGCGGCGCT
ATATTTGAAA CAAAAAATGC AGGCTACACA GGAACAGGCT ATGTAAATTA TGACAATGTA
CCCGGCGGAT ATATCGAATG GACACTGAAC ATAGCTAATG CAGGAACATA TACCCTGACA
CTTACATATG CAAACGGAAC TTCGTCAAAC AGGACGGTTG ACATAAGCGT AAACGGTAAT
ATCGTTGCCT CCGGTGTTGT ATTTGGAGGA ACAGGGTCAT GGACACAGTG GCAGACCAAG
AGTATAACTG CCTCATTAAA TTCCGGAGTT AACAAAATCA GAGTTACCGG CACATCATCA
GACGGAGGTC CCAACATCGA TAAACTCGAA ATAAGGAGAA ATTAA
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| Protein sequence | MSRCWVKCIS SMLAISLILF ASLTLTASLI VASFLPATTT YAQTVSPLDR PIGWASEAGG
TTGGGNAAPV IVTSASELQN LVKDNTPRVI YVQGNIGGNY TVGSNKTIIG LPGATTGSWT
FKGSSNVILR NLKIRGNGAD GDAVTVTDYS HHIWFDHLDL ADSTDENLSI KRGSDYITIS
WCKYWFSRDG GHTFGGLIGH SDNNAAQDEG RLRVTYHHNW YSKGVTERMP RVRFGKVHIF
NNLFDAPGNN YVIRCGYKAN IRSEGNVFVN MKNCFDFSTS SPDSVLQSIN DLFIGNCSGT
TGRGIAFVPP YQYTVEPTAG LKEKIEAGAG ATLNVPGTFS PTPSPSNTPT ATPTPASIVY
GDLNNDGRTN STDYSLMKRY LLGSISFTNE QLKAADVNLD GKVNSSDYTV LRRFLLGSID
LLPYNGTATY QAEDAVFSGA IFETKNAGYT GTGYVNYDNV PGGYIEWTLN IANAGTYTLT
LTYANGTSSN RTVDISVNGN IVASGVVFGG TGSWTQWQTK SITASLNSGV NKIRVTGTSS
DGGPNIDKLE IRRN
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