| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2949 |
|---|
| Symbol | |
|---|
| ID | 4810837 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 3466795 |
|---|
| End bp | 3468498 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640108372 |
|---|
| Product | pectinesterase |
|---|
| Protein accession | YP_001039340 |
|---|
| Protein GI | 125975430 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4677] Pectin methylesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.765546 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAA ACAAAAAAAT ATTACTTTTA CTATGCATTA ATCTTTGCCT GTTCTTTTTA
CTAATCAATA GAATTCAGCT TGTGTCTTCC GCAGCGGTCA ATGCGGATAT AATAGTTGCC
AAAGACGGTA CAGGCAATTT CACAACCATA CAGGCCGCAA TTGATTCAGT ACCGTCAAAC
AGTTCAAAAA GAACCGTTAT ATTTGTCAAA AACGGTACAT ACAAAGAAGT TGTTACAATC
AGGAAAAACA ACATACACCT CATCGGAGAA AGCAATACAA AAACAATCAT TACATATGAC
AATTATGCGG GTAAACTAAA ACCTGACGGC ACCACATACG GTACATCCGG TTCCGCATCA
TTCTATCTCT ATGGAACTGA CACAATCCTT GAAAACATCA CAATTGAAAA TTCCTTTGAT
GAAAGTATCG ACGTAAAAGA CAAGCAAGCC GTAGCTGCTT ATATCCGCGG CGACAGGCAA
ATAATCAAAA ATTGTATTTT TATCGGAAAT CAGGATACCT TGTATGCACA CTCGGGCAGA
CAGTATTATG TGAACTGCAA AATCATAGGT GACACGGATT TTATATTTGG CGGCGCCACA
GCTGTATTTG AAAACTGCGA AATTGTTTCA ACACCCAAAG GGGGATATGT CACTGCTGCA
AGCACTGATC TCGAAAATTA CGGATTTCTG TTCTTAAACT GCAGATTGAC AAGCGATGCT
CCCAAAAATT CAACATATCT TGGAAGACCC TGGCGTCCCA ATGCATATGT AGTTTACAAA
ACATGTTATT TGGGAGCGCA TATAAAGGAG TCCGGCTGGA CCAGCATGAG TGGTAATTTG
CCTGAAAATG CGCGCTTTTT TGAGTACAAA AACACAGGCC CGGGAGCGGT GGTCAACTCA
TCGAGAAGAC AGTTGTCATA CGCCGAAGCC GCAAAATTTA CTCCGCAAAA CCTATTAAAA
GGTACTGACA ATTGGAATCC GGTTGCGCTC GTGTCTCAAA CGTCAACTTT AACACCGACT
CAAAAACCCA CCTCAACACC GGCTCCAACC CCAATGGACG GCCAATTGAT AAAATCATTA
ACGGTAAAGG ATTCGGCAAA TTCGTCCAAT TGGTCCATAC AGTCGAATTT ACGGGTTGGT
GATACAGTTT TTGGTGACAG AACATACAAG TTTGTCACAA TTCCAAATGA GTTCCTTGGC
TCCGAATGGA TCAGGACAGC CTGTGACTCG AAAAAATCCA CAGAAGACCT GGCCTACTTT
ACCGCCAAAG CTGACATAAC CGTATATGTG GGTCTGGACT CAAGGGTTGC AACCATACCG
TCATGGCTTA ACGATTGGAC CAAAACCTCA CTGACAATAA CCGACGACGG TTCACCACAG
GTTACCTACA ACCTTTACAA AAAGAATTTC AGTGCAAACT CCGTTGTAAC CCTTGGTCCT
AATGGGGCTT CAAGCGGGGC TGTGAATTAT ATTGTCATAG TTAAACAAAA CAATCAAAAT
ATAGTATATG GTGATTTGAA CGGAGACGGA CTGGTAAACT CAAGCGACTA TTCATTATTA
AAAAGATACA TACTTAAACA AATAGATTTG ACGGAGGAAA AACTTAAGGC GGCAGACCTG
AATAGAAACG GCTCCGTTGA CTCAGTGGAT TATTCCATAT TAAAGAGATT TTTGTTGAAA
ACAATTACAC AATTGCCTGT ATAA
|
|---|
| Protein sequence | MIKNKKILLL LCINLCLFFL LINRIQLVSS AAVNADIIVA KDGTGNFTTI QAAIDSVPSN
SSKRTVIFVK NGTYKEVVTI RKNNIHLIGE SNTKTIITYD NYAGKLKPDG TTYGTSGSAS
FYLYGTDTIL ENITIENSFD ESIDVKDKQA VAAYIRGDRQ IIKNCIFIGN QDTLYAHSGR
QYYVNCKIIG DTDFIFGGAT AVFENCEIVS TPKGGYVTAA STDLENYGFL FLNCRLTSDA
PKNSTYLGRP WRPNAYVVYK TCYLGAHIKE SGWTSMSGNL PENARFFEYK NTGPGAVVNS
SRRQLSYAEA AKFTPQNLLK GTDNWNPVAL VSQTSTLTPT QKPTSTPAPT PMDGQLIKSL
TVKDSANSSN WSIQSNLRVG DTVFGDRTYK FVTIPNEFLG SEWIRTACDS KKSTEDLAYF
TAKADITVYV GLDSRVATIP SWLNDWTKTS LTITDDGSPQ VTYNLYKKNF SANSVVTLGP
NGASSGAVNY IVIVKQNNQN IVYGDLNGDG LVNSSDYSLL KRYILKQIDL TEEKLKAADL
NRNGSVDSVD YSILKRFLLK TITQLPV
|
|---|
| |