| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2948 |
|---|
| Symbol | |
|---|
| ID | 4810836 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 3465900 |
|---|
| End bp | 3466742 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640108371 |
|---|
| Product | Allergen V5/Tpx-1 related |
|---|
| Protein accession | YP_001039339 |
|---|
| Protein GI | 125975429 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2340] Uncharacterized protein with SCP/PR1 domains |
|---|
| TIGRFAM ID | [TIGR02909] uncharacterized protein, YkwD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0215583 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGGA AGATGGTCTT ACTAATTGTT CTTGCCCTTG TTCTGGCAGG GAGCACGGGT
CTTTTGGGGC TTAGCTTCCA GAATGCTTCG GCGGCCACTT CTTTCCAAAG GGTAAATTTT
GTAACCGGAG TGGTGACTGC TGACAGTTTA AATGTAAGAC AGGGTCCGTC TACCAAATTT
CCTGTTGTAT GTGTACTTAA GAAAGGACAG ACTGTTAATG TATTTGGGAA ACTGGGGGAT
TGGTACGCAA TTTATGAACC TGCTACCGGA TGTGTGGGAG CGGTATCTTC AAAGTATATC
AAGCAGCAGG GTACTACCAC AACTCAAACA ACCAAAAAAC CAGCGAAGAC TTCCGCGCCA
AAAGCACCGG CACCAACACC GGCAAAAGCT TCACCTGCAC CGACTGCCGC AGTTAAGACA
AGTCCGGCTG CCCAAGTAAC TTCGACACCG GTTACAGGTC TGAATGCAGA TGAGCAGTTG
ACGCTGGAAC TTATTAACAA GGAAAGAACG AAAGCGGGCC TTGAGCCACT CAAAATTGAT
GCAGAGCTGC AGAAAGTGGC AAGGCTCAAA GCGAAGGATA TGGTTGAAAA GAACTATTTC
TCCCACCAGT CCCCGACATA TGGTTCGCCT TTTGACATGA TGAGACAGTT TAACATAAGC
TTTAGGACAG CAGGGGAAAA TATTGCAGGA AATCGTACGG TAGAAGGAGC CGTTCAGTCC
TGGATGAACT CGGAAGGACA CAGGAAGAAT ATATTAAACG CCAATTTCAA TTATACCGGA
ATCGGTGTTG TCGAAAGTCC TCAATACGGT AAGATGTTTG TACAAATGTT TATCGGCAAA
TAA
|
|---|
| Protein sequence | MKRKMVLLIV LALVLAGSTG LLGLSFQNAS AATSFQRVNF VTGVVTADSL NVRQGPSTKF
PVVCVLKKGQ TVNVFGKLGD WYAIYEPATG CVGAVSSKYI KQQGTTTTQT TKKPAKTSAP
KAPAPTPAKA SPAPTAAVKT SPAAQVTSTP VTGLNADEQL TLELINKERT KAGLEPLKID
AELQKVARLK AKDMVEKNYF SHQSPTYGSP FDMMRQFNIS FRTAGENIAG NRTVEGAVQS
WMNSEGHRKN ILNANFNYTG IGVVESPQYG KMFVQMFIGK
|
|---|
| |