| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2900 |
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| Symbol | |
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| ID | 4809107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | + |
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| Start bp | 3425716 |
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| End bp | 3426474 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 640108319 |
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| Product | RNA polymerase, sigma 28 subunit |
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| Protein accession | YP_001039291 |
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| Protein GI | 125975381 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02980] RNA polymerase sigma-70 factor, sigma-B/F/G subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00742668 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGACG ATGCAGTAAA CAATAACAAT GTTGTAAATG ACAGCGATGA GTTGTTTAGA
GAATATAAAG AGACAAAAAG TGTTGAGGTA AGAAACAAAA TTGTAAGCAA ATATCTTTAT
CTTTCGGACA TACTTGCCAA AAAATTTTTA AACAGAGGCA TTGATTATGA AGACATTTAT
CAGGTGGCTT CCATTGCCTT GATTAAAGCG GTGGAGAGAT TTGATCCCGA CAAGGGTGTT
AAATTTATAA GTTTTGCAAC ACCCACTATT ATCGGCGAAA TAAAAAGATA TTTCAGGGAC
AAGGGTTCCG TTATCAGAAT TCCCAGAAGA ATATATGAGG TTTATCAGAA GATTAACCAT
GCCAGGGAGT CATTGACTCA GGAATTAAAA AGGCCTCCGA GGATAGATGA GCTTGCCCGG
CATTTAAATA TCAGTGAAGA AAGCGTTGTT GAAATTATTG AATCCTACAA CGCTTATAAT
ATCCAGTCCT TCAGTCAGAA TGTGTATGCC AACGATGAGT TGGAGCTCCA TGAAGTTATC
GGTGATCAGG ATTCCACTTT CGAAAGAATT GAGAACAGGG ATTTTCTTGA AAAGAGTCTT
GATAAATTCA GCGATGTTGA GAAAGAATTT ATCAGCATGA GGTATTTTGA CAACAAGACT
CAGAAAGACA TTGCCCAAAA GATGGGCGTA TCGCAGATGT ATATTTCCAG GCTTGAAAGA
AAGGTACTGG AAAAATTCAG GAGAATGCTG GCAAAATAG
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| Protein sequence | MMDDAVNNNN VVNDSDELFR EYKETKSVEV RNKIVSKYLY LSDILAKKFL NRGIDYEDIY
QVASIALIKA VERFDPDKGV KFISFATPTI IGEIKRYFRD KGSVIRIPRR IYEVYQKINH
ARESLTQELK RPPRIDELAR HLNISEESVV EIIESYNAYN IQSFSQNVYA NDELELHEVI
GDQDSTFERI ENRDFLEKSL DKFSDVEKEF ISMRYFDNKT QKDIAQKMGV SQMYISRLER
KVLEKFRRML AK
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