| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2866 |
|---|
| Symbol | |
|---|
| ID | 4809146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 3385500 |
|---|
| End bp | 3386813 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640108285 |
|---|
| Product | phage major capsid protein, HK97 |
|---|
| Protein accession | YP_001039257 |
|---|
| Protein GI | 125975347 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
|---|
| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTTA TAGCAGATTT GGTACATGAG AAAAAGCAAT TGGTGGAGAA AGCAGAAGCT
ATTTTAAACG AAGCTGAAAA AGCAGGTGGA AGTTTGACGA ATGAACAGGA GCGACAGTTT
AACCGCTACA CAGACAAAAT TAAGAGCATT AATGAAAGCA TTGACGAGGA ATTATTAAAT
ATCAGAACCT CTGAGCCAAT TCTAATTACA CCACAAAAAG CTGTATCTCC TATTGAAGAA
TCAAAAACAC CTGTAACAAA AGCCGTATCA AAATCATTCA GAGGGATGTT CTATGGAAAC
GAAACTGTGA GCTTAAGCAA CAATGGTTTT CATTCCATGG ATGAATTCCT GAGAACACTT
CACTCAGGCA GAGCCGACAA CAGGCTAATA AATGCCAGTA TGGTGGAAGG GATACCTGAA
TTCGGCGGAT ATTCCGTACC GGAGGAATAC GGAGCCTTCC TGATGGATAA ATCCCTGGAG
AATGAAATCA TCCGTCCAAG AGCAACGGTA TGGGCAATGG GAAGTGAAAC AAAGAAAGTA
CCAGCCTTTG ACGGAGCAGA CAGAACCAAC AACCTATTCG GCGGCATCTC GGGCGAATGG
CTTGAAGAAG GACAGACAGG CACACGAAAA ACAGCCAAGT TAAGGCTGAT TCAACTGAAA
GCCAAGAAGC TGGCTTGTTT CTCACAGGCA TCCAATGAAC TTATTGCAGA TGGGATGTCC
TTTGAAGAAA TGTTAGCTGG AGCACTCATT AAAGGCTTGG GCTGGTACAT GGACTATGCC
TTTATCAATG GAACCGGTGA AGGCCAGCCT CTTGGTATTA TAAATGACCC GGCGCTGATT
ACTGTAAATA AAGAGGACTC TCAAGAACCA GCTACAATTA CCTATCAGAA TGTTGTCAAT
ATGTTCTCAA GGCTTGCTCC ATCCTGCTTT ACCAATGCGG TATGGCTTGC CAATCCATCG
GTAATACCAC AATTACTTAC CATGACTATC ACCATTGGTA CCGGTGGCGC TCAGATACCG
GTGTTCAGGG AAGAGAGCGG GAAATTCACG CTTCTGGGTA AGGAGGTCTT ATTCACTGAG
AAATGCCCCG CATTGGGTGC TAAGGGAGAT TTAATCCTTG CAGATCTTTC CCAGTATGCC
ATAGGCATGA GGAAAGAGAT CGCTCTTGAC CGCTCCAATG TCCCAGGCTG GATGGAGGAT
ATGACCGACT ACAGGGTGAT AGTGCGTGTA GATGGTCAGG GAACCTGGGA TAAACCTATA
ACACCGAAAA ACGGAGCAAC GCTCTCATGG GCAGTGGCTC TGGAGGCAAG ATAG
|
|---|
| Protein sequence | MRFIADLVHE KKQLVEKAEA ILNEAEKAGG SLTNEQERQF NRYTDKIKSI NESIDEELLN
IRTSEPILIT PQKAVSPIEE SKTPVTKAVS KSFRGMFYGN ETVSLSNNGF HSMDEFLRTL
HSGRADNRLI NASMVEGIPE FGGYSVPEEY GAFLMDKSLE NEIIRPRATV WAMGSETKKV
PAFDGADRTN NLFGGISGEW LEEGQTGTRK TAKLRLIQLK AKKLACFSQA SNELIADGMS
FEEMLAGALI KGLGWYMDYA FINGTGEGQP LGIINDPALI TVNKEDSQEP ATITYQNVVN
MFSRLAPSCF TNAVWLANPS VIPQLLTMTI TIGTGGAQIP VFREESGKFT LLGKEVLFTE
KCPALGAKGD LILADLSQYA IGMRKEIALD RSNVPGWMED MTDYRVIVRV DGQGTWDKPI
TPKNGATLSW AVALEAR
|
|---|
| |