| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2787 |
|---|
| Symbol | |
|---|
| ID | 4810104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 3287171 |
|---|
| End bp | 3288847 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640108207 |
|---|
| Product | ferredoxin |
|---|
| Protein accession | YP_001039179 |
|---|
| Protein GI | 125975269 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3894] Uncharacterized metal-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.978566 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGAAG TAGTGTTTTA CCCGCAAAAC AAGTCCATTA ATGTAGAAGA AGGAACCACC
ATTCTTCAGG CGGCCCGCAG TGCAGGAGTG ATAATAGAGT CCCCGTGCAA CGGTACAGGA
ACTTGCGGAA AATGCAAAGT AAGACTGGAT GAGAAATCTT TGCCAAATGT CCTGGCAAAA
AGCAGGCATT ACCTTTCCAA AGAGGAAGAG GAGCAAGGGT ATGTACTGGC CTGCGAAACG
CAAATAACCG GGGACATCAA GGTTGAACTT GGCGAAAACA AGCAAAATGG CACTCTCAAA
ATATTAAGCA GGGGTCACAG TTTTAATATA GATTTGAAGC CTTTTATAAG AAAGGAATAC
TTCGTCCACG AAGACGTTAC AAAAGTGTTT GCCGGAAAAG AACAATTGGG AATTGAAGCA
GGAGATACAA CAAAAGAAAA CTATGGAGCC GTCGTTGACA TAGGAACTAC AACCTTGGTG
GCCTCCATTG TAAATTTAAA CAACGGGGAC GAAATAGGTA CTTCTTCGGC ATTAAATCCT
CAGGCCGTCC ATGCCCAGGA TGTGTTGTCG AGAATCAAGT TTTCATCCGA TGCCGATGGG
CTTAAAGTTA TGCATAGTGA ACTGACAGAC AAAATTAACA GCATGATTGG TAAAATAGCT
TTAAGGGCCG GTATCAGCAA AGAACACATA TATGAAATTG TTTTCAGCGG CAACACATGC
ATGCTTCATT TGGCTTCAAA CACCTGCCCC GAATCCCTTG GGAAGTATCC GTATACTCCA
AAGATAAGCG GTGCCGCATA TCTGGACGCT GCCAAATACA ATATTGATAT TTCGCCGTTT
GGAATTATAT ATCTGCCTCC GATTATATCG GCTTATGTGG GCGCTGACAT CGTTTCCGGA
ATTTTGGCAT CGCAGCTTCA TGAGAAAGAT GGCGTTATTT TGTTTGTTGA CATAGGTACC
AACGGGGAAA TGGTACTGGC CTCTTGTGGA AATCTTTCGG CTACGTCCAC GGCGGCAGGA
CCGGCTTTTG AAGGAATGAA CATAACCTGC GGCATGAGGG CGGGGGAGGC GGCAATAGAG
TTTTTTGAAA TTGAGGAACA GGGGAGTATT AACATTAAGG TTATCGGTGA AACGGAAGCG
GCGGGAATTT GCGGAAGCGG GCTTTTGGAT ATGGTTGGTG AGTTTGCGGC CCATGGAGTT
ATTAAAAAGA ACGGCCAATT TATTGACCCG GAAAGCGAAA ACGTTCTGCA TCCGAAACTG
GCGGAAAGAC TTGTAAGACA GGACGGAAAA TGGATTTTTA AAGTTACCGA CAAAGTTTTC
CTTTCTCAAA AAGATATAAG GCAGGTTCAG CTTGCAAAGG GAGCTGTAAG GGCCGGAATT
GAATTTTTGC TGGAAAACAA AGGGGTAAGA GCCTCCGATG TGGATAAAGT GCTTATTGCT
GGGTCTTTTG GATATCATCT GAGGGAAAAA AGCCTTATCA ATATAGGTCT TCTTCCAAAA
GAGTTTGAGG GTAAGGTGGA GTTTGTCGGC AATACTTCGC TGTCCGGCGC AAAAGCCTTT
CTTTTGAATC AAACCTATAG GGAGAAAATG AAGGAAACGG TAAAAAGTGT CGAGGTTCTG
GAACTGGCAA ATTACAAGGA TTTTGACAGG GTCTTTGTCA GGTGCCTGAG TTTTTAG
|
|---|
| Protein sequence | MPEVVFYPQN KSINVEEGTT ILQAARSAGV IIESPCNGTG TCGKCKVRLD EKSLPNVLAK
SRHYLSKEEE EQGYVLACET QITGDIKVEL GENKQNGTLK ILSRGHSFNI DLKPFIRKEY
FVHEDVTKVF AGKEQLGIEA GDTTKENYGA VVDIGTTTLV ASIVNLNNGD EIGTSSALNP
QAVHAQDVLS RIKFSSDADG LKVMHSELTD KINSMIGKIA LRAGISKEHI YEIVFSGNTC
MLHLASNTCP ESLGKYPYTP KISGAAYLDA AKYNIDISPF GIIYLPPIIS AYVGADIVSG
ILASQLHEKD GVILFVDIGT NGEMVLASCG NLSATSTAAG PAFEGMNITC GMRAGEAAIE
FFEIEEQGSI NIKVIGETEA AGICGSGLLD MVGEFAAHGV IKKNGQFIDP ESENVLHPKL
AERLVRQDGK WIFKVTDKVF LSQKDIRQVQ LAKGAVRAGI EFLLENKGVR ASDVDKVLIA
GSFGYHLREK SLINIGLLPK EFEGKVEFVG NTSLSGAKAF LLNQTYREKM KETVKSVEVL
ELANYKDFDR VFVRCLSF
|
|---|
| |