Gene Cthe_2727 details

Gene Information

• Locus tag: Cthe_2727
• Symbol: rpsL
• ID: 4810721
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: +
• Start bp: 3219171
• End bp: 3219599
• Gene Length: 429 bp
• Protein Length: 142 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640108146
• Product: 30S ribosomal protein S12
• Protein accession: YP_001039119
• Protein GI: 125975209
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0048] Ribosomal protein S12
• TIGRFAM ID: [TIGR00981] ribosomal protein S12, bacterial/organelle

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00000000304201
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAACGT TTAACCAGCT GGTCAGAAAA GGAAGAAAGG CTGCGAAGAA AAAATCAACG 
GCTCCGGCAC TTCAGAAGGG ATTTAACTCT TTAAAGAAGG TGCAGACGGA TATAAGCTGT 
CCCCAGAAAA GAGGAGTATG TACAGTTGTT AAGACTACAA CACCCAAAAA GCCTAATTCG 
GCTTTAAGAA AGATTGCGAG GGTGCGTTTG ACCAACGGTA TTGAGGTTAC AGCCTACATC 
CCCGGTATCG GGCACAACCT TCAGGAACAC AGTGTTGTGT TGATAAGGGG CGGAAGGGTT 
AAGGACCTCC CTGGAGTTAG ATATCATATT ATTCGTGGAA CTCTTGATGC TGCCGGTGTT 
GCAAAAAGAA TGCAAGGACG TTCGAAATAT GGTGCCAAAA GGCCGAAGTC CAGTGCGGCA 
GCTAAGTAA 

 

Protein sequence

MPTFNQLVRK GRKAAKKKST APALQKGFNS LKKVQTDISC PQKRGVCTVV KTTTPKKPNS 
ALRKIARVRL TNGIEVTAYI PGIGHNLQEH SVVLIRGGRV KDLPGVRYHI IRGTLDAAGV 
AKRMQGRSKY GAKRPKSSAA AK