| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2724 |
|---|
| Symbol | rpoB |
|---|
| ID | 4810718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 3211435 |
|---|
| End bp | 3215187 |
|---|
| Gene Length | 3753 bp |
|---|
| Protein Length | 1250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640108143 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_001039116 |
|---|
| Protein GI | 125975206 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.280863 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTACATC CCGTGAAATT GGGAAGAAAC GTTAGAATGA GTTATTCAAA AATTGATGAA
GTTATCGACA TGCCAAACCT TATCGAAATT CAGAAGAATT CGTACGAGCA ATTCCTCAAA
GAGGGTTTTA AGGAGGTTTT CAAAGACGTC AATCCCATAA CTGATTACAC CGGAAATCTG
ATTCTGGAAT TTGTAGACTA TTCATTGGAT GAACCCCCCA AATACAGTGT GGATGAATGT
AAAGAAAGAG ACGCGACTTA TGCTGCACCC TTAAAAGTAA AGGTGCGTCT TATCAACAAG
GAAACGGGCG AAGTTAAAGA ACAGGAAATT TTTATGGGTG ATTTCCCACT GATGACTGAA
ACGGGAACTT TTATTATTAA TGGAGCTGAG AGGGTTATAG TCAGTCAGCT TGTAAGATCA
CCCGGAATTT ACTATGCAAT GAAGATTGAT AAAGCAGGAA AACAGTTGTT TTCAAATACA
GTTATTCCAA ACAGAGGAGC ATGGCTTGAA TATGAAACCG ATTCAAACGA CGTTTTGTCG
GTGCGTATAG ACAGAACCAG GAAGCTGCCT CTGACGGTAT TGGTAAGAGC ACTGGGATAT
GGAACGGATC TTGAGATTAC CGAGCTTTTT GGCGAGGATG AAAGAATACT TGCGACAATA
CAGAAAGACA GTACCAAGAC AGAAGAGGAA GGACTTCTTG AGATATACAA AAGGCTCAGA
CCGGGAGAGC CGCCGACGGT TGAAAGTGCA AAAGCACTTC TCCACGGACT GTTTTTCGAC
CCTAAAAGGT ATGATTTGGC AAAGCCGGGA AGATTTAAAT TTAACAAAAA GCTTTCCATT
GCAGCAAGAA TACACGGCTT TATAGCAGGT GAAAATATTA AAGACCCTGA TACCGGTGAA
ATAATTGTTG CTGAAGGAGA AACCATTTCA AGGGAAAAGG CCGAAACGAT ACAAAATGCC
GGTGTCAATA CGGTAATTCT CAGAGTTGAC GGCAAAAATG TCAAAGTCAT CGGCAATGAC
ATGGTGGATA TCAAAAGATA TGTGGATTTT GACCCGAAGG AAATCGGCAT CAATGAAAAA
GTCAAAAGAG ATGTTTTAAT GGAGATTCTT GAAGAGTACA AGGGAAAGGG CGACGATGCG
ATCAAAAAGG CTTTACAGGA AAGAATTGAC GATCTGATTC CAAAGCATAT CACGAAAGAA
GATATAATAT CGTCCATCAG CTATATAATA GGATTGAGCT ACGGAATCGG AAGCACGGAT
GACATTGACC ATTTGGGTAA CAGAAGACTC CGTTCTGTAG GAGAGCTTCT GCAAAATCAG
TTCAGGATTG GTCTTTCCAG AATGGAAAGA GTGGTAAGGG AAAGAATGAC AATCCAGGAC
CTGGATGTTG TCACTCCACA GGCGCTTATT AATATAAGGC CGGTGGCGGC GGCAATAAAA
GAGTTCTTTG GAAGCAGCCA GCTGTCCCAG TTCATGGACC AGACCAATCC TTTGGCGGAG
CTTACGCATA AAAGAAGGCT CAGTGCGCTG GGCCCCGGAG GTTTGAGCAG GGAAAGAGCG
GGATTTGAAG TTCGTGACGT TCACCATTCC CACTATGGGC GTATGTGCCC TATAGAGACA
CCGGAAGGAC CGAACATTGG TCTTATCGGT TCGCTCAGTA CCTATGCAAG AGTAAATGAA
TACGGTTTTA TTGAAACGCC GTACAGAAAA GTAAGCAAGG AAGAACCGGG TAAAGTTACC
AACGAGATAG TTTACCTGAC TGCGGATGAG GAAGACGAAT ATATTATTGC GCAGGCAAAT
GAGCCGCTGG ATGAAGAAGG AAGGTTTATT TCCAATAAAG TTGTATGTAG ATACAAGGAA
GAGTTTATTG AGGTTGATCC GTCCAAAATT GACTTTATGG ATGTATCACC AAAGCAGATA
GTTTCTGTTG CGACATCAAT GATACCGTTC CTTGAAAATG ATGACGCGAA CCGTGCACTG
ATGGGAGCAA ACATGCAACG TCAGGCGGTT CCGCTTATAA AAACTGAGTC GCCGATTGTC
GGAACGGGAA TTGAGTACAG GGCTGCAAGG GATTCAGGAG TTGTTATACT GGCGAAAAAT
CCGGGAGTTG TTGAAAAGGT AACCGCCAAT GAGATTATTA TTCGTACAAA AGACGGTAAA
AGAGATACTT ACAAGCTCCT CAAATACATG CGCTCCAACC AGGGAACATG TATCAACCAA
AGACCGATAG TGAAAAAAGG TGAAGAGGTT GAAGCGGGAG ATGTAATAGC GGACGGTCCT
TCCACAGATA ACGGTGAAAT TGCATTAGGA AAGAATGTTC TGGTAGGATT TATGACCTGG
GAAGGATACA ACTACGAGGA CGCCATCCTG ATAAGTGAAA GACTGGTTAA AGATGATGTG
TTTACATCCA TCCATATAGA AGAGTATGAG GCTGAGGCAA GGGACACGAA GCTCGGTCCC
GAAGATATAA CCAGAGAAAT ACCCAATGTC AGCGAAGATG CATTGAAAGA CCTGAACAGC
GAAGGTATTA TCAGAATAGG AGCCGAAGTC AGAGCCGGTG ATATCCTCGT AGGAAAGGTT
ACGCCAAAAG GAGAGACGGA GCTTACCGCT GAAGAAAGAC TTCTTCGTGC AATTTTCGGA
GAAAAAGCAA GGGAAGTCAG GGACACCTCT TTGCGTGTGC CTCACGGGGA ATCGGGTATT
GTTGTTGACG TAAAAATATT TACAAGAGAA AACGGTGATG AACTGGCACC TGGAGTAAAC
AAGCTGGTAA GGGTTTATGT TGCACAGAAG AGAAAAATAT CTGTTGGAGA CAAAATGGCA
GGAAGACACG GAAACAAGGG TGTTATATCG AGGATTCTGC CGGTGGAAGA TATGCCTTTC
CTTCCTGACG GTACTCCATT GGATATAGTT TTAAATCCGC TGGGCGTTCC GTCCCGTATG
AATATCGGAC AGGTACTTGA GGTACATCTT GGTTATGCGG CTAAAGCCCT TGGCTGGAAA
GTTGCAACTC CGGTTTTTGA CGGTGCTACC GAGGAAGATA TAGTTCAGAC GCTGAGAAAA
GCAGGTCTTG CTGAAGACGG CAAGTCAATA TTGTATGACG GAAGAACGGG AGAACCGTTT
GAAAACAGGG TGACTGTAGG TTATATGTAT ATGCTCAAGC TTGCCCACCT TGTAGATGAC
AAGATACATG CCCGTTCAAC CGGTCCATAT TCTCTGGTAA CGCAGCAGCC TTTGGGAGGT
AAGGCACAAT TCGGCGGACA GAGATTCGGA GAGATGGAAG TTTGGGCTTT GGAAGCTTAC
GGTGCTGCCT ATACACTGCA GGAGATACTG ACGGTCAAGT CGGACGATGT AGTGGGCAGG
GTTAAGACTT ACGAGGCAAT AGTAAAGGGC GAAAACGTTC CGGAGCCGGG TATCCCCGAA
TGCTTCAAGG TTCTTATCAA GGAACTTCAA AGTTTGTGCC TTGATGTGAA AGTATACTCG
GAGGAACAGG AAGAAATAGC TATTAAAGAA TCGGTTGAAG ATGATCTTGA AGAACTTAAC
GTCAACATTG AGGGCAGGGA AGATGAAGTT AACTTCAATG AGTTTAACGA CATCGGAGAG
GAAATAACGG ATGAAGACCT TGAAGTGGAA GACTTCGACC TGCAGGATTT AAACGACGAT
GATATCAATC CTGATGACAC TATTGATGCC GAACTGGATG ACAATCTTTT TGACGATGAT
TTTGATGATA CTTTTGATGA CGATGATTTA TAA
|
|---|
| Protein sequence | MVHPVKLGRN VRMSYSKIDE VIDMPNLIEI QKNSYEQFLK EGFKEVFKDV NPITDYTGNL
ILEFVDYSLD EPPKYSVDEC KERDATYAAP LKVKVRLINK ETGEVKEQEI FMGDFPLMTE
TGTFIINGAE RVIVSQLVRS PGIYYAMKID KAGKQLFSNT VIPNRGAWLE YETDSNDVLS
VRIDRTRKLP LTVLVRALGY GTDLEITELF GEDERILATI QKDSTKTEEE GLLEIYKRLR
PGEPPTVESA KALLHGLFFD PKRYDLAKPG RFKFNKKLSI AARIHGFIAG ENIKDPDTGE
IIVAEGETIS REKAETIQNA GVNTVILRVD GKNVKVIGND MVDIKRYVDF DPKEIGINEK
VKRDVLMEIL EEYKGKGDDA IKKALQERID DLIPKHITKE DIISSISYII GLSYGIGSTD
DIDHLGNRRL RSVGELLQNQ FRIGLSRMER VVRERMTIQD LDVVTPQALI NIRPVAAAIK
EFFGSSQLSQ FMDQTNPLAE LTHKRRLSAL GPGGLSRERA GFEVRDVHHS HYGRMCPIET
PEGPNIGLIG SLSTYARVNE YGFIETPYRK VSKEEPGKVT NEIVYLTADE EDEYIIAQAN
EPLDEEGRFI SNKVVCRYKE EFIEVDPSKI DFMDVSPKQI VSVATSMIPF LENDDANRAL
MGANMQRQAV PLIKTESPIV GTGIEYRAAR DSGVVILAKN PGVVEKVTAN EIIIRTKDGK
RDTYKLLKYM RSNQGTCINQ RPIVKKGEEV EAGDVIADGP STDNGEIALG KNVLVGFMTW
EGYNYEDAIL ISERLVKDDV FTSIHIEEYE AEARDTKLGP EDITREIPNV SEDALKDLNS
EGIIRIGAEV RAGDILVGKV TPKGETELTA EERLLRAIFG EKAREVRDTS LRVPHGESGI
VVDVKIFTRE NGDELAPGVN KLVRVYVAQK RKISVGDKMA GRHGNKGVIS RILPVEDMPF
LPDGTPLDIV LNPLGVPSRM NIGQVLEVHL GYAAKALGWK VATPVFDGAT EEDIVQTLRK
AGLAEDGKSI LYDGRTGEPF ENRVTVGYMY MLKLAHLVDD KIHARSTGPY SLVTQQPLGG
KAQFGGQRFG EMEVWALEAY GAAYTLQEIL TVKSDDVVGR VKTYEAIVKG ENVPEPGIPE
CFKVLIKELQ SLCLDVKVYS EEQEEIAIKE SVEDDLEELN VNIEGREDEV NFNEFNDIGE
EITDEDLEVE DFDLQDLNDD DINPDDTIDA ELDDNLFDDD FDDTFDDDDL
|
|---|
| |