| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2654 |
|---|
| Symbol | |
|---|
| ID | 4808965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 3135802 |
|---|
| End bp | 3136512 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640108067 |
|---|
| Product | PHP-like protein |
|---|
| Protein accession | YP_001039046 |
|---|
| Protein GI | 125975136 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4464] Capsular polysaccharide biosynthesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGATA TACACTGCCA TATTGTTTTT GGAGTGGATG ACGGACCGAC AACAATTAAA
GATTCCGTAA GAATGATATT GGAAGCGGAA AAAATAGGAG TGGATAAAAT TATTGTCACC
CCCCATTACA AAAAAAACGT CTATGATTCG GACAAAGTGG TGAATAATTT TTACAAAATC
AAGTCGCGAG TTAGAGACTT CGGGATAGAC CTGTATTTGG GCTATGAGGT ATTTTTAGTT
TCTTCAATTA ACGATGTGCT TTTGCAAAAA GACAAATATA CATTGAACAA GTCCAAGTAC
CTGTTGTTTG AGCTGCCTTT TGACATAATG CCTGTCGGTA TCAATGAAAC CGTTTTAAAA
CTGCACTCGG AAGGGATAGT TCCCATCATA GCCCATCCGG AAAGGAACAT GTACTTTGCA
AAAAACATGC AGAAATTTAT TGAGTTTATA GAAACAGGAT GTCTTGTACA GTTGGATGCT
GCGAGCATAG TTGGAATTCA TGGGTCAGGC GTCAAAAGGT TTGCCAAAAA GCTTATTGAT
TTGAAATTGG TTCAATTTGT GGCGTCCGAT GCTCACAAAC CGGAGGATTA CGAGATATTC
AAAAAAGCGT ATGATATAGT TAAAAACTGG GCCGGAAAGG AATACAGCGA TAAAATATTC
ACTCACAATC AAAAAGTCAT TATTGCCCCT CCTATTTTGT CACACAGCTA A
|
|---|
| Protein sequence | MIDIHCHIVF GVDDGPTTIK DSVRMILEAE KIGVDKIIVT PHYKKNVYDS DKVVNNFYKI
KSRVRDFGID LYLGYEVFLV SSINDVLLQK DKYTLNKSKY LLFELPFDIM PVGINETVLK
LHSEGIVPII AHPERNMYFA KNMQKFIEFI ETGCLVQLDA ASIVGIHGSG VKRFAKKLID
LKLVQFVASD AHKPEDYEIF KKAYDIVKNW AGKEYSDKIF THNQKVIIAP PILSHS
|
|---|
| |