| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2620 |
|---|
| Symbol | |
|---|
| ID | 4809042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 3098687 |
|---|
| End bp | 3099466 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640108034 |
|---|
| Product | protein of unknown function DUF1078-like protein |
|---|
| Protein accession | YP_001039013 |
|---|
| Protein GI | 125975103 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG4786] Flagellar basal body rod protein |
|---|
| TIGRFAM ID | [TIGR03506] fagellar hook-basal body proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000392095 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGAG GTCTTTACAC GTCAGGTTGG AGCATGCTTG CCAACAGCAA GCAAATGGAT
GTTGTATCCA ATAATCTTGC AAATGTCAAT ACCACTGCAT TCAAAAAAGA TACGTTGATA
TTGGAAAGCT TTCCTGATAT GCTGGTAAGA AGAATCAATG ACAGCCGCAG CGCAAGCAAT
CCTTCAGGAA GGTTGGGGAA TGTGCAGCTT GGAAATGATG TGGGAGAGGT TTTTACATAC
TATACCCAGG GGCAGCTCCA GAAGACGGAC AACAATTTGG ACATGGCTAT TTCAAATTGT
GACACTGCCT TCTTTACCGT TGCGGTGCCC GGCGGGAACG AAGAGTATAC AGAGTACTAT
ACAAGGGACG GTTCTTTTGC ACTGAATGCA TACGGGCAAC TGGTGACAAA GGAAGGTTAC
CTGGTAATGG GCCAAAACGG TGTCATTACC CTGAACTCGG AGAATTTCAG CGTTAGCGAT
GACGGTACGA TTATTCAGGA CGGCGAGGCT GTTGCAAGAC TTTTAATAAG GAATTTTACC
GATACTACAA CTCTCAGGAA AGTGGGCTCA AACCTTGTGC AAAGAACTGA AAATACCCAG
GAACAGCCCT TTGACGGAGT GGTAAGGCAG GGCTATCTTG AACAGTCAAA TGTTAATTCC
ATTAATGAAA TGATTAATAT GATTACAATA ATGCGTTCTT ATGAGGCAAA TCAAAAAATC
CTTCAGGCCC AGGACGGAAC GCTTGAAAAA GCGGTAAACG AAATAGGAGT TGTAAGATAG
|
|---|
| Protein sequence | MIRGLYTSGW SMLANSKQMD VVSNNLANVN TTAFKKDTLI LESFPDMLVR RINDSRSASN
PSGRLGNVQL GNDVGEVFTY YTQGQLQKTD NNLDMAISNC DTAFFTVAVP GGNEEYTEYY
TRDGSFALNA YGQLVTKEGY LVMGQNGVIT LNSENFSVSD DGTIIQDGEA VARLLIRNFT
DTTTLRKVGS NLVQRTENTQ EQPFDGVVRQ GYLEQSNVNS INEMINMITI MRSYEANQKI
LQAQDGTLEK AVNEIGVVR
|
|---|
| |