Gene Cthe_2498 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_2498 
Symbol 
ID4809436 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand+ 
Start bp2965801 
End bp2966457 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content48% 
IMG OID640107913 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_001038893 
Protein GI125974983 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG5632] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.11512 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGTACCGT ACATAGTCGA CCACATACCC AAAACAACAC CTTACAACCG TCGCCCCGGA 
TATTCCATGA CGCCGGAATA TATCACAATA CATTCTACCG GCAATCCGAC CAGCACGGCA 
AGGAACGAAC GAGCGTGGTT AACTAACCCG AATAACAATG TCACGGCCAG CTGGCATATT 
GTAGTGGACG AAAAAGAGGC AATTGAAGCC ATACCTCTAA ACGAGGTCGC ATGGCATGCC 
GGGGACGGGG GGAACGGGAC GGGAAACAGA AAAAGCATTG GTATTGAAAT ATGCGAAAGC 
GGAGACAGGC AAAAGACTTT GCAGAATGCT GCGGAACTGG TTGCAAAGCT GCTGAAAGAG 
CGCGGCTGGG GAGTGGACAA GCTCCGTAGG CACTATGACT GGAGTGGTAA AATATGCCCT 
CGGATTTTCC ATGATAACGG CAAGTGGACA GGGTGGAAAC AGTTTAAGGA AGCTGTTCAA 
AAGGAACTTT TCGGAGGTGA TAACATGACA CAGGATAAAA ATCAGCCTTC CGACTGGGCA 
AAGGAAGCGT GGGAATGGGC AAAGCAGCAA GGTCTATTGG ATGGTACAAG ACCAAAAGAC 
AATCTTACCA GGCAAGAATT AGCGGTTGTA TTAAAAAGGT TGGCTGAGAA AAAATGA
 
Protein sequence
MVPYIVDHIP KTTPYNRRPG YSMTPEYITI HSTGNPTSTA RNERAWLTNP NNNVTASWHI 
VVDEKEAIEA IPLNEVAWHA GDGGNGTGNR KSIGIEICES GDRQKTLQNA AELVAKLLKE 
RGWGVDKLRR HYDWSGKICP RIFHDNGKWT GWKQFKEAVQ KELFGGDNMT QDKNQPSDWA 
KEAWEWAKQQ GLLDGTRPKD NLTRQELAVV LKRLAEKK