Gene Cthe_2489 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_2489 
Symbol 
ID4809427 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand+ 
Start bp2959377 
End bp2960036 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content37% 
IMG OID640107904 
Productpeptidoglycan-binding LysM 
Protein accessionYP_001038884 
Protein GI125974974 
COG category[S] Function unknown 
COG ID[COG1652] Uncharacterized protein containing LysM domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTATG CAGTGTTTTT CGATAAAGAT GGTGTGACAT ACCGTCTGCC TGTTAATCCG 
GAACAAATCG AAGTTATATC AAATCAAGCA ATTGAAAAAT ATGAAATATT AAAACTTGGA 
CAAATTGCTG TGCCAACACA TATGGAATTA ACCGAATATA GTTTTGAGTG CGAACTCCCA 
TTCAAACCTT TACATTATAT AGAAACAGCT GGCGATTTCA AGAATGCGGA TTTCTACCTT 
AACCTTTTTA AAGCATGGAG AGAAAAGAAA GAGCCGGTAC GCTTCATTGC TTCAAACGGT 
ATCGGCGATG ATATCAACTC GTTAGTACTT ATTGAAGAAT TAACTATCAC TGAAAAAGCA 
GGAGAAGAAG GAGATAAATA TGTATCTTTT CGTTTAGTAG AATATCGGCC ATACGGAAAG 
AAAACTGTTG TGATCCCGAC ACCAACCCAA ACAATAGTCA AAAAAGATGA ACCGGTTCCA 
GCGGTGTCGC TAAAAGCGAA TGATTACCAT GTAGTACAAC CTGGAGATAC CCTTTGGGGC 
ATCGCAAAAA AGTACTATGG AAACGGTAAT CAATATCAGA AAATTTACGA GGCAAATAAA 
AATCAAATCA AAAATCCTAA TCTCATATAT CCCGGGCAGA AGTTGGTGAT ACCGAGATGA
 
Protein sequence
MSYAVFFDKD GVTYRLPVNP EQIEVISNQA IEKYEILKLG QIAVPTHMEL TEYSFECELP 
FKPLHYIETA GDFKNADFYL NLFKAWREKK EPVRFIASNG IGDDINSLVL IEELTITEKA 
GEEGDKYVSF RLVEYRPYGK KTVVIPTPTQ TIVKKDEPVP AVSLKANDYH VVQPGDTLWG 
IAKKYYGNGN QYQKIYEANK NQIKNPNLIY PGQKLVIPR