| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2393 |
|---|
| Symbol | |
|---|
| ID | 4811045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 2858204 |
|---|
| End bp | 2859139 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640107806 |
|---|
| Product | thiamine pyrophosphate enzyme-like TPP-binding |
|---|
| Protein accession | YP_001038788 |
|---|
| Protein GI | 125974878 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00141499 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTATA ATTTGAAAGA AGTTGCAAAA AAACCGGAAA GACTTACGGG CGGACACAGA
ATGTGTGCAG GCTGCGGAGC TCCGATAGTT GTAAGACAGG TTCTTAAGGC ATTAAAACCG
GAAGATCATG CGGTTATCTC AGCTGCAACA GGTTGTTTGG AAGTTTCAAC TTTCATTTAC
CCTTATACAG CATGGAAGGA TTCTTTCATT CACAGTGCGT TTGAAAATAC CGGTGCTACA
ATTTCCGGTG CGGAAGCGGC TTATAAAGTA TTGAAGAAAA AAGGAAAAAT TGAAGGGGAG
ACCAAGTTTA TTGCGTTCGG TGGTGACGGC GGAACATACG ACATAGGACT TCAGGCACTC
TCAGGAGCGA TGGAAAGAGG ACACGACATG GTTTATGTGT GCTACGACAA TGGAGCATAC
ATGAACACAG GTATCCAGAG GTCTTCTGCC ACTCCGAAAT ACGCTGATAC CACAACTTCA
CCTGTTGGAA AGAAGATACC CGGTAAAATG CAGCCAAGAA AAGACCTGAC AGAAGTATTG
GTAAATCATC GCATACCTTA TGTTGCTCAA ACCGCTCCTT TCGGGAACAT GAAGGACCTC
TATGAAAAAG CTGAAAAAGC TATTTATACA CCCGGTCCTG CGTTCCTGAA CGTGTTGGCA
CCGTGCCCGA GAGGATGGAG ATACAACACT CCTGATTTGA TGGAATTGAG CAAATTGGCG
GTTGAAACTT GCTTCTGGCC GCTTTATGAA GTAATTGACG GCAAATATAT AATAAACTAC
AAGCCGAAGG AAAAAGTTCC CGTCAAGGAA TTCTTGAAAC TTCAGGGAAG ATTTAAACAT
CTTTTCAAAG CCGGCAACGA ATATATGCTG GAAGAAATTC AGAAAGAAGT CGACTTAAGA
TGGGAGAGAC TCTTGAAGCT GGCCGGAGAG GCTTAA
|
|---|
| Protein sequence | MAYNLKEVAK KPERLTGGHR MCAGCGAPIV VRQVLKALKP EDHAVISAAT GCLEVSTFIY
PYTAWKDSFI HSAFENTGAT ISGAEAAYKV LKKKGKIEGE TKFIAFGGDG GTYDIGLQAL
SGAMERGHDM VYVCYDNGAY MNTGIQRSSA TPKYADTTTS PVGKKIPGKM QPRKDLTEVL
VNHRIPYVAQ TAPFGNMKDL YEKAEKAIYT PGPAFLNVLA PCPRGWRYNT PDLMELSKLA
VETCFWPLYE VIDGKYIINY KPKEKVPVKE FLKLQGRFKH LFKAGNEYML EEIQKEVDLR
WERLLKLAGE A
|
|---|
| |