| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2166 |
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| Symbol | |
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| ID | 4810879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | + |
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| Start bp | 2576033 |
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| End bp | 2577169 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640107569 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001038561 |
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| Protein GI | 125974651 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGCAT TAAATAACAA GCTTTATTTT ATAGACAGCA CGAAACATAA GATCTTTGTA
GAACAAATTA TAAACGGAAT GCATGACTGG GTAAGGGTTA TTGATATTAA CGACAATATA
ATCTTTGTCA ACGAATCCAT GGCAAAAGCA CTGGGCAAAA ACGTAATCGG GGAAAAATGT
TATAAAGCCA TCGGAAAAAG CGAGCCCTGT GAAAACTGTA CCTCAAGAAA AGCAGTTTTC
GAAGGAACAA TTCAAGCCAA GGAAGAAATC ATAGGGGATA GAATTTTCTC CGTCAAAAGT
TCCCCCATCA GGGATGAGAA CGGCCAAATT ACCGCTGTTG TTGAAGTTCT CCGTGACATA
ACCGAAATGA AAAAAATGCA GAAAAAAATC CTTGAGCACA ACCAAAAACT TCAGAGCGAG
CTTAACATGG CAAGAAGACT TCAATGCAGC CTTCTTCCAA AGGAACTGCC CCAGGACAAG
ATTGATTTCT CATATGTTTA CAGGCCCTGT GAAGCCATCG GAGGGGACTT TTTGGATATA
TTCAAGATCG ATGATGAGCA CATTGGAATA TATATCGCCG ATGTATCCGG GCATGGAGTA
CCGGCTTCAA TGCTTACAGT TTTCTTACGC TCTTCAATAA ACAAAAAAAC CCTTTCGCCC
GCAGAAGCTT TAAATCAGCT CTACAAAGAG TTTAACCGGG ATTATTATGA CCAGGAGTTG
TACATCACAA TATTTTATGC CATCATTGAC ACTAAAAATA AAAATATCAT ATATTCAAAT
GCAGGCCACA ACGCCAGTCC CGTATTATTC AACCATGAAA GCCACAGGTT CGACATTCTT
AGAATACCCG GAGTTCCCAT CAGTGACTGG GTTGACAATC CGGAATATAC TGAAAAAAGT
ATTTCAATTG AAAAAGGCGA CCGATTGTTT ATGTATACCG ACGGTATTGT GGAACTGCGA
AACAACAAAG GTGAGCAGTT TGGCGAGGAA AGGCTCCTTA ACATTTTGCT GGGTGAAAAA
ATGCCTCCTG CAATGACTCT TGACCGCATC ATAGAAGCTG CCATGGAATT TGCAAATATC
AAAAATTTCA ATAAAATAAT AGACGATATT ACAATGGCCT TGCTGGAAAT CTTATAA
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| Protein sequence | MDALNNKLYF IDSTKHKIFV EQIINGMHDW VRVIDINDNI IFVNESMAKA LGKNVIGEKC
YKAIGKSEPC ENCTSRKAVF EGTIQAKEEI IGDRIFSVKS SPIRDENGQI TAVVEVLRDI
TEMKKMQKKI LEHNQKLQSE LNMARRLQCS LLPKELPQDK IDFSYVYRPC EAIGGDFLDI
FKIDDEHIGI YIADVSGHGV PASMLTVFLR SSINKKTLSP AEALNQLYKE FNRDYYDQEL
YITIFYAIID TKNKNIIYSN AGHNASPVLF NHESHRFDIL RIPGVPISDW VDNPEYTEKS
ISIEKGDRLF MYTDGIVELR NNKGEQFGEE RLLNILLGEK MPPAMTLDRI IEAAMEFANI
KNFNKIIDDI TMALLEIL
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