| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_2059 |
|---|
| Symbol | |
|---|
| ID | 4810657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 2450391 |
|---|
| End bp | 2451035 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640107466 |
|---|
| Product | RNA polymerase factor sigma-70 |
|---|
| Protein accession | YP_001038459 |
|---|
| Protein GI | 125974549 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02859] RNA polymerase sigma-H factor
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.116438 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGTCAA ATGCACAAAT TGATTCAGTA AAATGCTTTA GTACCATGAA CGATGAAGAA
ATAGTTGAAG ATAGCCGCGC CGGTGATGAC AGGGCCCTCG AATATTTAAT CAACAAGTAT
AAAGGTTTTG TTCGTGCAAA GGCCAGAACT TATTTCCTTA TTGGAGCCGA TCGGGAAGAC
ATCATTCAGG AGGGAATGAT TGGCCTTTAC AAAGCCATAA GGGATTTCAG GAAGGACAAG
CTTTCTTCCT TCCGCGCTTT TGCCGAGCTC TGTATAACAA GGCAGATTAT AACCGCCATA
AAGACTGCCA CCCGGCAAAA ACACATACCT TTAAATTCCT ATGTCTCCCT TAACAAGCCT
ATTTTCGACG AGGAGTCGGA TCGTACCCTC ATGGACATTA TCAGCGAGGA GAGCATAAAC
GATCCGGAGG AAATGGTTAT AAACAGGGAA GAGTTTTCGG GAATTGAGGC TAAGATGGGA
GAAATTTTAA GCAGTCTGGA ATGCGAAGTT CTGACTTCGT ATTTGCAAGG CAAGTCCTAT
CAGGAAATTG CGGTTGAATT GGACAGGCAT GTGAAGTCGA TAGACAATGC GCTACAGAGA
GTAAAACGTA AGTTGGAAAA ATATCTTGAA GAATCAAGGA TATAA
|
|---|
| Protein sequence | MKSNAQIDSV KCFSTMNDEE IVEDSRAGDD RALEYLINKY KGFVRAKART YFLIGADRED
IIQEGMIGLY KAIRDFRKDK LSSFRAFAEL CITRQIITAI KTATRQKHIP LNSYVSLNKP
IFDEESDRTL MDIISEESIN DPEEMVINRE EFSGIEAKMG EILSSLECEV LTSYLQGKSY
QEIAVELDRH VKSIDNALQR VKRKLEKYLE ESRI
|
|---|
| |