Gene Cthe_1960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_1960 
Symbol 
ID4810743 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand- 
Start bp2335339 
End bp2336421 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content46% 
IMG OID640107376 
Productpeptidoglycan binding domain-containing protein 
Protein accessionYP_001038371 
Protein GI125974461 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3409] Putative peptidoglycan-binding domain-containing protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAAAGA AGAAACCTGC TTTGTTTGCG GTCATTCTGC CTCTCTTAAT CGCCTGTATA 
ATGATTAATT CTTCAATGGT ATTTGCATCT TCAGGGATTT TGAAGGAGGG AATGAGCGGA 
AGCCAGGTTA CATCACTGCA GAGGGATCTT AACACGCTGG GGTATCTTGA TGTAACTCCT 
ACAGGTTATT ATGGCAGTCT TACAACAGCA GCAGTTAAGA AGCTTCAGAG AAATTACGGA 
CTTAAAGAGG ACGGCATTGC GGGGCCTGAC ACTCTCTCGC TTATCAAAAG GCTGATAAAC 
GAAAGGACTG CTTCAAGGTC TTCCGGCGGC ACAACGTTGA AAGAGGGTAT GAGCGGGAGC 
AGTGTGACAG CTTTGCAGAA GGACTTGAAA GCTTTGGGCT ATCTGAGCGT GGATCCAACG 
GGTTACTATG GAAGCCTTAC AAAAGAAGCG GTAAAGAAAC TTCAGGCAAA GCACGGTCTT 
GAGCAGGACG GAATTGCAGG ACCGAAGACC TTGGCATTGA TTGACAGGCT TATGGGAAGA 
AGCGGTAGTT CTGCTTCACA ATCCGCAGCT ACGGCATCCA GGGGAGGGCT CGATAAGACC 
AATTACCTTT ATTCCTGGTT CGGTAATGCG GAAAACATTT TCAAGATAGG CGATACAGCA 
CAGGTATATG ACATTAGGAC TGGGCGCACA TTTAATATAA AGAGGACTTA TGGCTATAAC 
CATGCAGACT GTGAGACTTT AACCGCTAAA GACACGGAAA TAATGCTCAG TATCTACGGC 
GGAAGCTGGA GTTGGGAAAG AAGACCGATA ATTGTTATTG TCAACGGGAG AAAAATGGCG 
GCTTCGATGG CGGGAATGCC TCATGCAGGA GTTGACAGTG CGCCGGCTAA TACATATGTA 
AAATCGAGAA GCGGAGGATA TGGCGCAGGA GACAATCTCG ACTCCGTTAA AAACAACAAC 
ATGAACGGAG TGTTTGACGT TCACTTTTTA AACAGCAAGA CTCATGGAAC CAACAGAGTG 
GATGAAAATC ATCAGAAGGC GGTCAGGGAA GCGGCAGAGT GGGCTGCAAA GAATAAGTTT 
TAG
 
Protein sequence
MQKKKPALFA VILPLLIACI MINSSMVFAS SGILKEGMSG SQVTSLQRDL NTLGYLDVTP 
TGYYGSLTTA AVKKLQRNYG LKEDGIAGPD TLSLIKRLIN ERTASRSSGG TTLKEGMSGS 
SVTALQKDLK ALGYLSVDPT GYYGSLTKEA VKKLQAKHGL EQDGIAGPKT LALIDRLMGR 
SGSSASQSAA TASRGGLDKT NYLYSWFGNA ENIFKIGDTA QVYDIRTGRT FNIKRTYGYN 
HADCETLTAK DTEIMLSIYG GSWSWERRPI IVIVNGRKMA ASMAGMPHAG VDSAPANTYV 
KSRSGGYGAG DNLDSVKNNN MNGVFDVHFL NSKTHGTNRV DENHQKAVRE AAEWAAKNKF